K01742

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01742

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01742

Determination of introduced cDNA(s)

  • J013021J15 - Rice Full-length cDNAs - Original: J013021J15

    full reading [+] show sequence

    Nucleotide sequence: J013021J15 - full reading
    GATGGAGGCG GCGGCGGCGG CCTCTCCACC GGCCGGAAGA TGGTCCCGTC 
    GTCGAGCTGG GCCGAGCGGC GCGGCTCGTG CGCGACGGCC TCTTCTTCTC
    CCCCTGCCCC ATCGCCGCTC TTCACAGGAT CGCGGCGTGG CGGAGCAGGG
    GCGCCCTCCC GGTCGCCGTA GATGTGGCCG CGGCGTTCGT CGAGATACGG
    CTGCGGGAAT CGGAATCCCT TCTTCTTCCC GGAATGTGAT GGCTGTGGAT
    GATCCGCTGG AGTCTGAAGA GATGTCGGCG ATGCTGTGTA GTATGGCAAT
    CATGAGGTGA ATCCAATGCT TGAATGCCAG CAAAAATGGA AATTTATATT
    CCCTTGTTCT GTGGCTTGTG ACAAATATAA AAGAAATAAA GGATTCAGGC
    TGCATTGGAC TTGTTCACGA GATAGGAGTG CTCTCTTCAG ACAGAAATGT
    AGTCCAATGT TCCTGTCCAG CAAAACTTCT GCAGAAGTTG AGTTTGTCCA
    CTATAGGTGA AAGATGTCTC ATAGATGCAG CACTACTGCT GTTTGAGATG
    GCCAGCAATA ATGTGAAAGA GAAACTGAGG AAGCTTCTTA TGTTATCCCT
    GGGAAAGTTG GCTAGAATTT CTATCCTCAC GGAGTCCTCC AAAGAAATAG
    AATCAGCTGA CAGGGCAACA GAGAAGCTGG AAATGTTCAA GTCACAGTTG
    AAACAGAAGG ATGTATGTTT GGCAGAAAAT GGCAACGGGG GATCATTGAA
    CACAATCTTG TTGGAGAAAC GTAGCAGATG GTCTATAACA AAGTCTTGGA
    CCCCCTGTGC GATAGGAATG GTACCATGCT CATTTAGTTC AACGGCTGTT
    CTTCCGACAC TTGATGTCAT CGATCATGAA TTGAAAGATG ACACATTGGA
    GCAACATGTA AATTTTGAGC TTGATGACCA TACTGAAAGG GCTGGCTATC
    ATTCTCATCC TGAGAAGCAA TTGGATGTTG AATGCATTCC GGCAATATCT
    GAACGTGAGA TTTCAGATAT GTCAGAAGTG ACCTTTCCTC TGAAAGTCTG
    AAGGGTAAGT TACTGGTTGG TGGCGTGTGG AAGGTGATGA GTGAAGGGAG
    CTACTCTTGA TTAAGTCAAA GATGAAAATT TTGTTGTAAC AGTAGCTAGT
    TAAGTTGTGT CATGTGTCCT CTTAAACCAG CAATTTCAGG CTGTTACGAA
    CGGCGGATAG TTCTATCTTA AAGCTGGAAA AAAAGAGAGG GAAATATATG
    ACCAGTACTT AAACTTGGAC TAGGGTGTCA TTTAGGTCTA TGAACTTATA
    ATGCACATCC ATTTCCTATT TTGGTTTAAT ATATAATCTG AGGTTCAAAG
    TACAAGTGAC TCAGGTTGGG TGCTG

    Gene models with high sequence identity

    Not founds.

     

    InterPro Scan Digest

    See the detailed result >

  • J023119J07 - Rice Full-length cDNAs - Original: J023119J07

    full reading [+] show sequence

    Nucleotide sequence: J023119J07 - full reading
    AAAACCCTCC TCTCCTCCCC CTCTCCCCTC CTCTTCCCCG TGCGACCCGC 
    CCAACCCAAA CCCTAGGTCA CCCAGCGCCG CGGCGCCCCC GGTTGCTGAC
    TTGCCGCGGG AAGGAGGATG AGCAGGCGGT GGAGCCGGAC GATCTACGTG
    GGGAATCTCC CTGGTGACAT CAGGGAGAGG GAGGTGGAGG ATCTCTTCTA
    CAAGTATGGC CGAATTGTTG ATATTGACTT GAAGATCCCT CCGAGGCCAC
    CAGGCTATGC TTTTGTAGAG TTTGAAGATC CTCGTGATGC TGAAGAAGCA
    TGTGCTGGCA GGGATGGTTA TAACTTTGAT GGACATCGTC TAAGGGTTGA
    ACCTGCTCAC GGTGGGAGAG GTAATGGTGG TTCCTCCTTT GACCGCCCCA
    GCAACTTTGG TGGTGGAGGA CGCCGTGGTG TGTCCAGGCA CTCAGAATAC
    CGTGTTCTGG TTACTGGTTT GCCTTCTTCT GCATCATGGC AAGATTTAAA
    GGACCATATG CGCAAGGCTG GTGATGTTTG TTTCTCAGAA GTGTATCGCG
    AGGGCGGCGG TACTGTAGGG ATTGTGGACT ACACAAACTA TGATGACATG
    AAATATGCTA TAAAGAAACT TGATGACAGT GAATTCAGGA ATGCCTTTTC
    TAAAGGTCAC ATAAGGGTGA AGGAATATGA TGGCAAGCGC GCCCGCTCCT
    ATTCACGTAG CCGAAGCCCA AGTCGTAGCC GAAGCAAAAG CAGGAGTCTA
    AGTAAATCTC CTAGAACTCG CCGTTCAGCA TCCCGATCTC GATCTCGATC
    AAGGTCTGTT TCTTCCCGTT CACGGTCAGC ATCAAAAGGG CGCTCTCCAT
    CAAGATCACC AGCAAGATCC AAATCTCCAA ATGCTTCTCC TGCAAATGGT
    GAAGCATCAA GCCCCAAGAA ACGGAGCCCA AGCAGGAGCC CATCTCGTTC
    ACGGTCTCCT GATGCGAAAT CTGAATAGAA GTGATATGCT GATGTGAGCA
    GTGACACGGA CTTCTCATGT ACGGCTATTT GCTGTCCTTG ATGTCCGATT
    ACATCCGAAT CTTAGCTGTG GTGCAATGAA GCTCCATTAA ATTTGATACT
    ATGAATTTGT AGTAATGAAA ACATCAAACT ATGCACTTCA TGTGGCCTTC
    TGTGGCTGGT CTTGTTCCCT TGGGTTTTTG GTAGTTCGCC GAATGCTACT
    ATCTGGATTA TTTTTACTCA AAACATATGT CGGATGCTTA TTGATTTCCA
    AAAAAAAAAA AAAACTCTCC AGAAGGGTAT TATTACTGGC ACTCCAGTGA
    AGGATGCCGG AGAAGATAAT ATCATCCTTT GGAAACAAAA GCTAGAAGAT
    GGTAACGTCA AGCTGCAGTC TAGGCTCGAA CAAGAGGAGG AAGCTAAAGC
    TGCTTTGCTT GCAAGGATAC AGCGTCTCAC AAAGCTTATC TTGGTCTCCA
    CTAAGGCGAC ACAAACTTCT AGATTTTCTC CACATCCTGG ACCAAGAAGA
    AGACATTCTT TTGGGGAAGA GGAGCTTGCG TACCTACCTT ACAAAAGACG
    TGATATCGTG TTGGATAATG AAAGCAATGA ATTACTTTCT CCTGTTGAAG
    GACTTGGCAT GACACTTGAA GATTCGAAGG AGGAGAAAAA GAATCGGAAA
    GGAATTCTTA ATTGGTTTAA ACTTCGGAAA CGTGAAGGTG GAGCTTCTAT
    TCTGACAAGT TCAGAAGGTG ACAAGTCCAG TTTGACTAAA TCAACTGCTC
    CTTCAACACC TATTGGGGAG AGTGTTAATT TTCCTTCCGA ACCAAGAATA
    TCAAATTCTT TGGTTGGTGA GAGTGCATCG GTCGATCTCT TTAGCATTGG
    CCATGGGGAG TTCGCTAATG ACAGCCTTCA TGGAGAAGAA ACACCTCTGG
    CCAGCAGAAA AACAATAGAT CACGTTGACT TACTGAGAGA GCAATTGAAG
    ATTTTGTCAG GGGAGGTTGC ACTTCATACA AGTGTCCTAA AGCGCCTTAC
    CGAGGAAGCT GGAAGGAGCC CAAATAATGA GAAGATTCAG ATGGAAATGA
    AGAAGGTTAC TGATGAAATT AAGGGAAAGA AGCATCAGAT AGCGTCTTTA
    GAAAGGCAGA TACCTCATTC CATCTCAAAT AATCAAGGGA TGGCTGACAA
    GTTAGAACTT ACTCCGTCTT ATGCTGAACT GCTTGAGCAA CTCAACGAGA
    AATCCTTTGA TCTCGAGGTG AAGGCAGCAG ATAACAGAGT AATACAAGAC
    CAACTTAATG AAAAGACAAC TGAATGCATG GAATTACAAG AGGAGGTTGC
    TCACCTGAAA GAGCAACTTT ACCAAACTCT TCAAGCTAAG GATTCACTGT
    CAAATAGCAT TATGATGCAG AAGAATGCAG GAATTAACCA TGAAACTGAT
    AATCATGCTG ATCAAGAACT ATCAGTTCCT AGAGAGGTCC CTGGTGAAAC
    GTCGCCAAAA GAACCACAGT CAGTTGAGAT TGATGAGCTG AAGCAGAAGG
    TGTGTGAGCT GATTGAAGTA AAAGCTCAAC TAGAGACTCG CAACCAGAAG
    CTACTAGAGG AAAGCACGTA CGCGAAAGGC TTGGCTTCGG CTGCGGGAGT
    TGAATTGAAA GCGTTGTCGG AAGAAGTCAC CAAGCTCATG AACCAAAACG
    AGAAGCTTGC TTCTGAGTTG GCATCGGTGA GAAGTCCAAC CCCGCGTAGA
    GCCAACAGTG GACTGAGAGG TACTCGGAGG GATAGCATCA GTAGACGACA
    TGAGCCAGCT CCAAGAAGAG ACAACAACGC AGGCTACGAG AGAGAAAAGG
    CATTAGAAGC TGTGCTTATG GAGAAGGAAC AAAAGGAAGC AGAACTCCAA
    AGGAGAATTG AGGAGTCGAA GCAAAAGGAA GCCTTCTTGG AAAGTGAACT
    TGCAAACATG TGGGTTCTAG TGGCAAAACT GAAAAAGTCT CAAGGCCATG
    ATCTTGAGGA TTTTGACACC AAATATATTG GCTCGTAACA TCATAACTCT
    AGGCTAATTA ATTATTAGTA GTGCGACTGG CTTGGGTACG TCTGTATGTA
    AGATAAGAGA TTTATACCAG GTTTCCTGTT GCAGTGTGAA TTAGTTCCCA
    TCTTGTATAT TCGCCGGTTG ATCAAAGTTG TGAGGCCTTG TTGGGCTGAT
    GTGCTGAGAG CTTCCATAAT TGCTGCAATG GGTTTTTGGA TTCTCCTGTC
    ACTGGTGCCC CTACCAAATA TATCTACTAA CATGTATTGG CTCTGCCCAT
    CCTGCACTTG GGGAGAACAT CGGTTTGTGA ATATATTCCG CGTGAGTGAA
    TCACATTGAT TGTATCATCA GTTAGCCTTT TGTAAGTTTT TCCTGTGGGA
    TGCTTGCTTC AGTAATAATG TAATAGTCAG GCCTCTTGTG GTCCGGCGTT
    GGTTTTGGAA ATGCAAACGT TTGCTTTGTC

    Gene models with high sequence identity

    1. AT3G12020.1 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
      E-value: 2e-125; Score: 447.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther ARGININE/SERINE-RICH SPLICING FACTOR 2.3e-89
    HMMPanther KINESIN FAMILY MEMBER 11 1.2e-53
    HMMPanther KINESIN HEAVY CHAIN 1.2e-53
    ProfileScan RNA recognition motif, RNP-1 17.933
    ProfileScan RNA recognition motif, RNP-1 9.047
    HMMSmart RNA recognition motif, RNP-1 2.3e-23
    HMMSmart RNA recognition motif, RNP-1 0.00000044
    HMMPfam RNA recognition motif, RNP-1 6.6e-18
    HMMPfam RNA recognition motif, RNP-1 0.0000000018
    superfamily RNA-binding domain, RBD 2.1e-22
    superfamily RNA-binding domain, RBD 0.000000000000056
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    Gene3D Nucleotide-binding, alpha-beta plait 1.5e-23
    Gene3D Nucleotide-binding, alpha-beta plait 0.0000096

    See the detailed result >

    AT3G12020.1

    Model type
    Protein coding
    Short Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Computational Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G06670.1); Has 40862 Blast hits to 28121 proteins in 1485 species: Archae - 327; Bacteria - 3144; Metazoa - 20118; Fungi - 3973; Plants - 3090; Viruses - 66; Other Eukaryotes - 10144 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR