K01840

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01840

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01840

Determination of introduced cDNA(s)

  • J023061B16 - Rice Full-length cDNAs - Original: J023061B16

    full reading [+] show sequence

    Nucleotide sequence: J023061B16 - full reading 
    GGCCGCCGCC ACTCCCCTCT CGCCTTCCTT TCCCCAACTA AACCCTAACT 
    CCTCGCCGCC GCCTCCGCCT CCGCCTCCTC GTCGGAGCAG CGAGCCGCTG 
    CTCCTTCTCC TCCACCACCA GCCATGGCGA CCCAGATCAG CAAGAAGAAG 
    AAGTTCGTGA GCGATGGCGT GTTCTACGCG GAGCTGAACG AGATGCTGAC 
    GCGGGAGCTG GCCGAGGACG GCTACTCCGG CGTGGAGGTG CGCGTGACGC 
    CGATGCGCAC GGAGATCATC ATCCGGGCCA CGAGGACGCA GAACGTGCTC 
    GGCGAGAAGG GGCGCAGGAT CAGGGAGCTC ACCTCCGTCG TGCAGAAGCG 
    CTTCAACTTC CCCGAGAACG GCGTCGAGCT CTACGCCGAG AAGGTCGTCA 
    ACCGCGGCCT CTGCGCCATC GCCCAGGCCG AGTCCCTCCG CTACAAGCTT 
    CTTGGAGGCC TCGCCGTCCG CAGGGCTTGC TATGGTGTTC TTCGCTTTGT 
    TATGGAGAGT GGTGCCAAGG GTTGCGAGGT CATTGTAAGT GGAAAGCTCA 
    GGGCCCAAAG AGCCAAGTCC ATGAAGTTCA AGGATGGTTA CATGATCTCA 
    TCTGGTCAGC CAGTCAATGA GTACATTGAC TCGGCTGTGA GACACGTGCT 
    CCTGAGACAG GGTGTTCTTG GCATCAAGGT GAAGATCATG CTCGACTGGG 
    ACCCCAAGGG CAAGGTTGGC CCGACCACCC CTCTGCCGGA TCTTGTAACC 
    ATCCATGCTC CCAAGGAGGA GGAGGAGCTG CGCCCTCCGG TGTTGATCGC 
    TGAGGCTTAA GCTTATGATG ATATTTCACA TCTTTTTGAA GCCTTGGGCA 
    TGTTTGACAG TACCCTCTTA AAACTCCAGT TTGGCCAGTT CTAGCTAGGT 
    CTCTGTCTTC AGTAAGGGCA ATGCAACAGT CGGTTACTTC AGTTTTATTA 
    TGGACAAAAG CTATGTACTG GTGTCATTTT ATTTTTTTTT AAACTAAGTT 
    TTGCCGAGAC AAAAGTTCCA GTCATATGTA TGCCAAATCT TGGTTTGTAG 
    CCCC

    Gene models with high sequence identity

    1. AT3G53870.1 [+] show detail - Ribosomal protein S3 family protein
      E-value: 5e-109; Score: 391.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ribosomal protein S3, C-terminal 1.8e-18
    HMMPfam K Homology, type 2 1.1e-07
    superfamily Ribosomal protein S3, C-terminal 2.1e-29
    superfamily K Homology, prokaryotic type 1.8e-16
    PatternScan Ribosomal protein S3, conserved site 0
    HMMTigr Ribosomal protein S3, eukaryotic/archaeal 1.4e-95
    Gene3D Ribosomal protein S3, C-terminal 4e-20
    HMMPanther 40S RIBOSOMAL PROTEIN S3 3.6e-101
    HMMPanther 30S/40S RIBOSOMAL PROTEIN S3 3.6e-101
    ProfileScan K Homology, type 2 11.016

    See the detailed result >

    AT3G53870.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein S3 family protein
    Computational Description
    Ribosomal protein S3 family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: response to salt stress, translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, membrane; EXPRESSED IN: root, leaf; CONTAINS InterPro DOMAIN/s: K Homology, prokaryotic type (InterPro:IPR009019), K Homology, type 2 (InterPro:IPR004044), K Homology (InterPro:IPR004087), Ribosomal protein S3, C-terminal (InterPro:IPR001351), Ribosomal protein S3, eukaryotic/archaeal (InterPro:IPR005703); BEST Arabidopsis thaliana protein match is: Ribosomal protein S3 family protein (TAIR:AT2G31610.1); Has 5912 Blast hits to 5911 proteins in 2101 species: Archae - 256; Bacteria - 3650; Metazoa - 372; Fungi - 151; Plants - 167; Viruses - 0; Other Eukaryotes - 1316 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR