K01846

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01846

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01846

Determination of introduced cDNA(s)

  • J033123F02 - Rice Full-length cDNAs - Original: J033123F02

    full reading [+] show sequence

    Nucleotide sequence: J033123F02 - full reading 
    GGGGGCTTTT TAGTCTACTC GATCTAACTC CAAATCCCAT CAACCCCGCC 
    GCCGCCGCCG CCGCCGCCAC CACCGCGAGA CGCGAGAGGA GAGTGAAAGA 
    AAGATTCAGA GAGAGAGAGA GAGTAAGCAT GATGTCCTTC AGCCAGCCCG 
    ACGCCTTCTC GCCGTCGCAG TTCACCTCCT CCCAGAATGC CGCCGCCGAC 
    TCTACCACCC CTTCCAAGAG CCGGGGCGCA TCGAGCACCA TGCCGCTCAC 
    CGTGAAGCAG ATCTCTGAAG CGCAGCAATC TGGCATCACC GGGGAGAAGG 
    GCGCTCCCTT CGTCGTCGAC GGCGTCGAGA CAGCCAACGT TAGGCTTGTG 
    GGATTGGTCA GTGGCAAGAC GGAGCGGAAC ACCGATGTGT CCTTCACGAT 
    CGACGATGGC ACCGGCCGCC TCGATTTCAT CAGATGGGTC AATGATGGTG 
    CTGATTCTGC TGAAACCGCT GCTGTTCAGA ATGGAATGTA TGTTTCTGTC 
    ATTGGTAGCC TCAAGGGGCT TCAGGAGAGG AAGCGTGCTA CTGCTTTCGC 
    TATCAGGCCT GTAACTGATT ATAATGAGGT CACACTGCAT TTCATTCAGT 
    GCGTGCGAAT GCATTTAGAG AACACCAAAT CACAGATTGG TAGCCCTGCA 
    AAAACATATT CTGCCATGGG ATCCTCATCT TCCAATGGCT TCAGTGAAAT 
    GACCACTCCG ACCTCTGTGA AATCCAACCC GGCACCAGTG CTCAGTGTAA 
    CAAATGGATC AAAAACTGAT TTGAACACAG AAGTGCTGAA TGTTTTCCGC 
    GAACCAGCAA ACGTCGAGAG CGAGCATGGT GTGCACATTG ATGAAATCGT 
    GAAGCGCTTC AGGCTACCGG AGGCCAAGAT CAAGGTAGCT ATTGATTACC 
    TCGCTGACAT TGGGCACATA TACTCAACAA TCGACGAGTC TCACTACAAG 
    TCAGCGTTCA ATGAATAAAG GGGATTGAAG CCTCAGTTAC TTACTAGTAT 
    GTATCCTCTA GCCTCGAAGC TGGCTGCAGC TGAAACTGAA GAACAATCGA 
    GATGCTTCAT GTTTGCTTGT CATACTAACC AGTGTGCGTT TGTTTTGCTC 
    CATCCAGTGA AATTACATGT AACCGTATCT GTATTACGAG TAGCACATAT 
    CGAGTGACAA AACATATAAT ATATGTATGT TTGTTGTTTT GCAGCACC

    Gene models with high sequence identity

    1. AT2G24490.2 [+] show detail - replicon protein A2
      E-value: 2e-42; Score: 170.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Replication protein A, C-terminal 1.7e-24
    HMMPfam Nucleic acid binding, OB-fold, tRNA/helicase-type 0.00028
    Gene3D Nucleic acid-binding, OB-fold 2.1e-38
    Gene3D Winged helix-turn-helix transcription repressor DNA-binding 2.1e-07
    HMMPanther REPLICATION PROTEIN A-RELATED 1.5e-100
    Coil coiled-coil 0
    superfamily Nucleic acid-binding, OB-fold-like 2.3e-34
    superfamily "Winged helix" DNA-binding domain 6.3e-17

    See the detailed result >

    AT2G24490.2

    Model type
    Protein coding
    Short Description
    replicon protein A2
    Curator Summary
    Encodes a component of Replication Protein A. Component of transcriptional gene silencing which does not affect endogenous small RNA accumulation nor DNA methylation. Localized in the nucleus. Involved in DNA repair. Interacts physically with ROS1.
    Computational Description
    replicon protein A2 (RPA2); CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Replication protein A, subunit RPA32 (InterPro:IPR014646), Replication protein A, C-terminal (InterPro:IPR014892), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365); BEST Arabidopsis thaliana protein match is: Replication protein A, subunit RPA32 (TAIR:AT3G02920.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR