K01901

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01901

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01901

Determination of introduced cDNA(s)

  • J023091A07 - Rice Full-length cDNAs - Original: J023091A07

    full reading [+] show sequence

    Nucleotide sequence: J023091A07 - full reading 
    CCCTCCGCCC CCATGAACGT CGTCTCCCCC GCACCATACT ACTCCTCGTA 
    CCCGGCGGTG ACGGATTTCC TCAAGTCGGG GCTGTACAGG TGGGCCGGCG 
    ACGCCAAGAT GTTCGACGGC GACACCTACG TCGAGCTCGT CTGCTCGCCG 
    AGCAACCCGG ACGGCGGCAT CCGCGAGGCC GTGCTCAAGT CCGGCGACGG 
    CGTCGCCGTC CACGACCTCG CCTACTACTG GCCGCAGTAC ACCCCCATCA 
    CCAGCGCCGC CGCCCATGAC ATCATGCTCT TCACCGTCTC CAAGTGCACC 
    GGCCACGCCG GCACCCGCCT CGGGTGGGCG CTGGTGAAGG ACAGGGCGGT 
    GGCGCAGAAG ATGAGCAAGT TCATCGAGCT CAACACCATC GGCGTCTCCA 
    AGGACTCGCA GCTCCGCGCC GCCAAGATCC TCAAGGCCAT CACCGACGGC 
    TACGACCGCG CGCCCGCCGC CGGCGACGAC GACGACGACT CGAGCCGACT 
    GTTCCACTTC GCCCGCCGCA AGATGGTCTC TCGCTGGGCC AAGCTCCGCG 
    CCGCCGTCGC CGCCTCCGGC ATCTTCACCC TCCCCGACGA GCTCCCCGGC 
    CACTGCACCT TCGCCAACGA GACCGTCTCC GCCTACCCCC CGTTCGCGTG 
    GCTGCGCTGC GGGAAGGAAG GGGTGGACGA CCTGAAGGGG TACCTGCGCG 
    AGCGCAAGAT CATCAGCCGC GGCGGCGGCA AGTTCGGCGC CGACGGGAGG 
    GTGGTCAGGA TCAGCATGCT CGACACCGAC GAGGCGTTCG CCATCTTCGT 
    CGACCGCCTC GCCGCCATGA ACTGATCGGT CGATCGAGCG AGCGAGCTCG 
    CCCCAGCTAG GGCTTGATCT TGAATCTTGA TCGATGTCGA CGATGAGATG 
    GTCAGTTAAG TTGCGAGGAT TAAGATCAAG CTTAATTAGT TATCGTCGTC 
    GTCTTTGGTT GCTTCATCAA GTTCGGTTCT AGATATCGAT CTGGGGTGCA 
    TGCATGGTAA TGTGCTTTGG TTAATATTAG TCCAAAACTC TATATAATTT 
    TGGATCGACT CTTAAAATTT CGATGTTGTG TTGTGAGACT TTAATTTGTG 
    AGTTTGTGGC TGGTTGGATA TCAATATGGA TCATAATTAA GT

    Gene models with high sequence identity

    1. AT4G24670.2 [+] show detail - tryptophan aminotransferase related 2
      E-value: 9e-74; Score: 274.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Pyridoxal phosphate-dependent transferase, major domain 3.4e-51
    Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 1 2.3e-66
    Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 2 2.1e-36
    HMMPfam Allinase, C-terminal 5.5e-101

    See the detailed result >

    AT4G24670.2

    Model type
    Protein coding
    Short Description
    tryptophan aminotransferase related 2
    Curator Summary
    Encodes a protein with similarity to the TAA1 trytophan aminotransferase involved in IAA biosynthesis. Double mutant analyses suggest that this protein is involved in regulating many aspects of plant growth and development from embryogenesis to flower formation and plays a role in ethylene-mediated signaling.
    Computational Description
    tryptophan aminotransferase related 2 (TAR2); FUNCTIONS IN: L-tryptophan:2-oxoglutarate aminotransferase activity, carbon-sulfur lyase activity, L-tryptophan:pyruvate aminotransferase activity; INVOLVED IN: in 12 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Allinase, C-terminal (InterPro:IPR006948); BEST Arabidopsis thaliana protein match is: tryptophan aminotransferase related 1 (TAIR:AT1G23320.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR