K01908

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01908

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01908

Determination of introduced cDNA(s)

  • J023128J04 - Rice Full-length cDNAs - Original: J023128J04

    full reading [+] show sequence

    Nucleotide sequence: J023128J04 - full reading 
    TGGTGAAGCA TTTCGGCTCA AAGGGGAAAT AAAAAGGGGA AGATTTTTTT 
    TGCATCTCAT CCTCTCGCTC TCGCCGTCTC TCGCCGCTCC CCCCCCTTTC 
    CAGGCTCCAA TCCCGCCGCC GCGTAGGATG GCCAAGACGC GGCAGCCGCA 
    GAAGCGGGTG CTGGAGTCGT TCACCATCAA GGGGCCCGAC GGGGTCATCA 
    AGCCTGGGGA TACTGTGCTA ATGATGGCAC CTGACTCATC AAAGAAACCA 
    TATGTGGCAA GGGTTGAGGA AATTGAGGCA ACAGGACCTC AAGCCTCTCA 
    AGTGAAGATC AAGGTGCGGT GGTACTACCG CCCAGAAGAG TCCATTGGTG 
    GCCGGCGGCC ATTCCATGGT TCGAAGGAAG TATTTCTTTC TGACCACTAT 
    GATTCGCAGA GTGCTGACAC CATAGAGGGC AAGTGTTATG TCCACACCTT 
    TCGAGATTAC ACCAAGCTTC GATCTGTCAG CGCTGAGGAC TTCTTTTGCC 
    GCTTTGAGTA CAAATCTGCC ACAGGCAGCT TTGTGCCTGA CCGTATAGCT 
    GTGTTTTGCA AATGTGAGAT GCCATACAAT CCTGATAACC TTATGATCCA 
    ATGTGAGGAT TGCTCTGACT GGTTTCATCC TTCCTGTGTT GAAATAACCA 
    TCAAAGAAGC GAAGAAACTA GAGCATTTTT ACTGTAAAAG CTGTATTGCT 
    GAAAATGGAA AGGATCTACA AAAGTCCAAT GGTGCTACTG TGCAATCTGA 
    AGAAAAGGTG CAGTCCAAAC GACGGCGGAG GTGATGCCAT GGAGACAGAA 
    TCTCAATACC TCCAAAGTGG ATGTAACAAT TCTGTGGGGA GCAAAGCCTC 
    ATCACTCCTC TAGATCTTCT CTCTTCTCTT CCTGTGCAAG GCTGCTTGCA 
    GCCAGTGACC AGTGTACTGT GTACATATTT ACCAGTGTTT TCTTTTTGCA 
    TCGTTTGCAT GGTCGTCGTA GCGTCGTCGC ATGTACTAGC TTGGAGTCAG 
    TCAGTCAGTT AGCTCGAGCA AAGGGATCAA ACTCCCTCTT GGTCATAAAC 
    TCATAAGCGA TGATGATAGA TGAAACTGGG CACTACCTAC CGTGGTTGTG 
    TTGTTGTCCA TCAATAATAC CTTGACGACT TGCTACCTGC CT

    Gene models with high sequence identity

    1. AT4G22140.2 [+] show detail - PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein
      E-value: 2e-76; Score: 283.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PHD FINGER TRANSCRIPTION FACTOR 5.1e-26
    superfamily Zinc finger, FYVE/PHD-type 4.7e-12
    HMMPfam Bromo adjacent homology (BAH) domain 7.3e-22
    HMMPfam Zinc finger, PHD-finger 4.9e-11
    HMMSmart Bromo adjacent homology (BAH) domain 4e-35
    HMMSmart Zinc finger, PHD-type 3.3e-09
    ProfileScan Zinc finger, PHD-finger 9.17
    ProfileScan Bromo adjacent homology (BAH) domain 23.454
    Gene3D no description 2.1e-16
    PatternScan Zinc finger, PHD-type, conserved site 0

    See the detailed result >

    AT4G22140.2

    Model type
    Protein coding
    Short Description
    PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein
    Computational Description
    EARLY BOLTING IN SHORT DAYS (EBS); FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: positive regulation of flower development, regulation of transcription, DNA-dependent, seed germination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: Bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT4G04260.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR