K02012

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02012

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02012

Determination of introduced cDNA(s)

  • J033041J08 - Rice Full-length cDNAs - Original: J033041J08

    full reading [+] show sequence

    Nucleotide sequence: J033041J08 - full reading 
    GATCGCTTCT CATCGCAAAT CGCATCGACT TCGATTCGCT TCGTTTCGTT 
    CTCGCTGTTG ATTTGTTCGT GAGATTTGAA TTCTAGCAAT GGCTCCTCTC 
    GGTGACGGAG CGGCGGCGGC GGCGGCGGCG GAGCCCAACC TGGTGGTGTC 
    GTTCGGGGAG ATGCTGATCG ACTTCGTCCC CGACGTCGCC GGCGTCTCGC 
    TGGCCGAGTC CGGCGGCTTC GTCAAGGCTC CCGGCGGCGC CCCCGCCAAC 
    GTCGCCTGCG CCATCTCCAA GCTCGGTGGC TCCTCCGCCT TCGTCGGCAA 
    GTTTGGTGAT GATGAGTTCG GGCACATGCT GGTGGACATC CTGAAGAAGA 
    ACGGGGTGAA CGCGGAGGGG TGCCTGTTCG ACGAGCACGC GCGCACGGCG 
    CTGGCGTTCG TGACCTTGAA AAGCAACGGC GAGCGCGAGT TCATGTTCTA 
    CCGGAACCCG AGCGCCGACA TGCTCCTGAC GGAGGCGGAG CTCAACCTGG 
    ACCTGATCCG GCGCGCCAAG ATCTTCCACT ACGGCTCCAT CTCCCTCATC 
    ACCGAGCCGT GCCGCTCCGC CCACGTCGCC GCCATGCGCG CCGCCAAGTC 
    GGCCGGCATC CTCTGCTCCT ACGACCCCAA CGTCCGCCTC CCGCTCTGGC 
    CGTCCGAGGA CGCCGCCCGC GCCGGCATCC TCTCCATCTG GAAGGAGGCC 
    GACTTCATCA AGGTGAGCGA CGACGAGGTC GCCTTCCTCA CCCAGGGCGA 
    CGCCAACGAC GAGAAGAACG TGCTCTCGCT CTGGTTCGAC GGCCTCAAGC 
    TCCTCATCGT CACCGACGGC GAGAAGGGAT GCAGGTACTT CACCAAGGAC 
    TTCAAGGGCT CCGTCCCCGG CTTCTCCGTC AACACCGTCG ACACCACCGG 
    CGCCGGCGAC GCCTTCGTCG GCTCCCTCCT CGTCAACGTC GCCAAGGACG 
    ACTCCATCTT CCACAACGAG GAGAAGCTGA GGGAGGCGCT CAAGTTCTCG 
    AACGCGTGCG GAGCCATCTG CACCACCAAG AAGGGTGCCA TCCCGGCGCT 
    GCCCACCGTC GCCGTCGCGC AGGAGCTCAT CAGCAAGGCA GCCAACTAGA 
    GCTCCTCGGT TTCGTCGTCG ATCGCCGCCA TTGGGGGCCT CGGAATTTTA 
    GGTCGATTTA ATTTAGTTGC TGCTTCGTTT TAGACAAGGA AGAGGAGGGG 
    CTTGGGTGTG TTCATGTCTG TCTTTTGTGT GCTAAGTTAG TTGCTTCCGT 
    GTGAGAACTT TTGGCGTTTA TTTTTACTAT TATTATTAAT AAGAAGCTCT 
    TGGATTTGGG GGTGG

    Gene models with high sequence identity

    1. AT4G10260.1 [+] show detail - pfkB-like carbohydrate kinase family protein
      E-value: 4e-138; Score: 488.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Ribokinase-like 5.1e-82
    HMMPfam Carbohydrate/purine kinase 5.4e-85
    HMMPanther FRUCTOKINASE 2.3e-133
    HMMPanther SUGAR KINASE RELATED 2.3e-133
    PatternScan Carbohydrate/puine kinase, PfkB, conserved site 0
    Gene3D no description 7.8e-86

    See the detailed result >

    AT4G10260.1

    Model type
    Protein coding
    Short Description
    pfkB-like carbohydrate kinase family protein
    Computational Description
    pfkB-like carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process, acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, leaf whorl, sepal, male gametophyte, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT3G59480.1); Has 19547 Blast hits to 19543 proteins in 2443 species: Archae - 410; Bacteria - 14542; Metazoa - 141; Fungi - 136; Plants - 489; Viruses - 0; Other Eukaryotes - 3829 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR