K02036

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02036

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02036

Determination of introduced cDNA(s)

  • J023059D06 - Rice Full-length cDNAs - Original: J023059D06

    full reading [+] show sequence

    Nucleotide sequence: J023059D06 - full reading 
    GATTGATTGA GCAGCCGGCG GCGGCGATCT TTGCTTAAAC CCTAATCTCA 
    GACGCTGCCT TTGAGAGAGG AGAGGGGGGA GATCTTCTTC TTCGCTTACG 
    GCGGGTGCAG ACAATATGGC CTCAGCATTC GGGAGCACCT CAGCATGTGG 
    CATCAAGATC ACTCCTACCG CTTTTGCCAC CAAGAAACAT CTTTGCCTGG 
    TTCCACCCCC AGTCGTTTCA CTTCCCCGGA AAAATAGGCC TCAGAGGAAG 
    TGTAATTTCA GAGTAAATGC TGCCAAAGAG TTATATTTCA ACAAGGATGG 
    GTTGGCTATC AAGAAGCTGC AAAATGGAGT CAATAAGCTT GCTGATCTCG 
    TTGGAGTCAC CCTTGGTCCA AAAGGACGGA ATGTTGTCCT TGAGAGCAAG 
    TATGGATCAC CTAAAATTGT CAATGATGGT GTTACCGTTG CAAAGGAGGT 
    TGAGCTGGAG GACCCTGTTG AAAATATTGG AGCCAAATTA GTCCGGCAAG 
    CTGCAGCCAA GACAAATGAT TTGGCTGGTG ATGGGACAAC GACTTCTGTT 
    GTCCTTGCTC AAGGGATGAT CACAGAGGGT GTTAAGGTTG TGGCTGCTGG 
    TGCTAATCCA GTACAGATTA CCCGTGGTAT AGAGAAAACG ACCAAAGCAC 
    TTGTGAGTGA ACTCCAAAAA ATGTCCAAGG AGGTTGAAGA CAGCGAACTT 
    GCTGATGTTG CTGCGGTAAG TGCTGGAAAT AACTACGAAA TTGGCAACAT 
    GATAGCTGAA GCTATGAACA AGGTTGGACG ACAGGGGGTG GTCACACTTG 
    AAGAAGGAAA GAGTGCTGAA AATAATCTCT ATGTTGTTGA GGGAATGCAA 
    TTTGATCGCG GCTATATTTC TCCCTACTTT GTAACTGACA GTGAAAAAAT 
    GTCAGTGGAG TATGAGAATT GCAAGTTGCT CCTTGTGGAC AAGAAAATCA 
    ACAATGCCAG AGATCTTATA ACAATTCTGG AGGATGCTAT TAGGGGTGGG 
    TACCCAATCC TAATAGTTAC GGAGGATATT GAGCAGGAAG CTCTTGCAAC 
    TCTTGTGGTC AACAGGCTTA GGGGTGCATT GAAGATTGCT GCTATTAAAG 
    CTCCTGGTTT TGGAGAACGC AAGAGTCAAT ACCTTGATGA TATTGCTACT 
    CTTACTGGAG GTACTGTCAT CAGGGAAGAA GTTGGCTTGT CCCTAGACAA 
    AGCTGATAGA GATGTTCTAG GAACGGCCGC CAAGGTTGTA GTTACCAAGG 
    ATTCAACAAC AATAGTTGGG GATGGTACTA CCCAGGACGA AGTAAACAAA 
    AGGGTGACAC AAATCAAGAA CCAGATTGAG GTTGCTGAAC AGGAATATGA 
    GAAAGAAAAA CTGAATGAGA GAATAGCTAA GCTCTCTGGT GGTGTTGCTG 
    TCAACCAGGT AGGAGCACAG ACAGAAACTG AGCTTAAGGA AAAGAAACTG 
    AGGGTTGAAG ATGCACTGAA TGCAACCAAG GCGGCTGTTG AGGAAGGTAT 
    TGTTGTTGGA GGTGGCTGTA CGCTTTTGCG GCTTGCATCA AAAGTTGATG 
    CCATTATAGA AACACTTGAG AATGATGAAC AGAAGGTTGG GGCTGAAATC 
    GTAAGGAAGT CCTTGAGTTA CCCACTTAAA TTAATAGCAA AAAATGCTGG 
    TGTTAACGGC AGTGTTGTTA CTGAGAAGGT CCTTGCCAAT GATAACTTCA 
    GGTATGGTTA CAATGCCGCT ACAGGAAAAT ATGAGGATTT GATGGCTGCT 
    GGTATTATTG ATCCCACCAA GGTGGTGAGA TGTTGCTTGG AGCATGCTGC 
    GTCGGTGGCG AAAACATTCA TCACATCAGA TGCTGTTGTG GTGGACATCA 
    AGGAGCCTGA GAAAGCAGCT GCTGCTGGGA ACCCAATGGG TGGATCAGGT 
    TTTGGATTTT AGTTTAGAAG AAGAGGAGTA CCCTTTTTGG CAGTTGGCAA 
    CCATTTTTAC ACTGGAGGCA GGCAGAATTT CACAGTTGCA TCTGAGACGT 
    TTTTTCTTTT CCTGTGTGTA ATTGTTGCGT ACGTCAATGT GGCAGATGAG 
    AGGAGTAGTA GGTTATGAAT GGCCAGCATT ATGACAGTTT ATTGTTGCTC 
    GACCTTACAG AAGAGCTGAA ACAGTGCAAC ATAATGTTTT TAAGGTTGAG 
    AATTATGCAA GCTGAAGTAG TTGGTAATAA CCGGGTGAGG ATTGTGTTGT 
    CGTTGGAGTA GATGATGATT TTACTAGCTA GTTAGATCGA GTTACAAACA 
    TATAATTAAT TAATTAAGGG GGCATTGGCA GATTACAATA ATAAATAAAT 
    TATTTACATG

    Gene models with high sequence identity

    1. AT1G55490.2 [+] show detail - chaperonin 60 beta
      E-value: 0; Score: 899.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther RUBISCO SUBUNIT BINDING-PROTEIN BETA SUBUNIT, 0
    HMMPanther Chaperonin Cpn60/TCP-1 0
    HAMAP Chaperonin Cpn60 36.582
    FPrintScan Chaperonin Cpn60 1.1e-66
    FPrintScan Chaperonin Cpn60 1.1e-66
    FPrintScan Chaperonin Cpn60 1.1e-66
    FPrintScan Chaperonin Cpn60 1.1e-66
    FPrintScan Chaperonin Cpn60 1.1e-66
    HMMTigr Chaperonin Cpn60 1.2e-302
    superfamily Chaperonin Cpn60/TCP-1 1.7e-72
    superfamily GroEL apical domain-like 5.7e-58
    superfamily GroEL-intermediate domain like 0.0000000000082
    Gene3D no description 8.4e-76
    HMMPfam Chaperonin Cpn60/TCP-1 3.7e-120
    PatternScan Chaperonin Cpn60, conserved site 0
    Coil coiled-coil 0

    See the detailed result >

    AT1G55490.2

    Model type
    Protein coding
    Short Description
    chaperonin 60 beta
    Curator Summary
    encodes the beta subunit of the chloroplast chaperonin 60, a homologue of bacterial GroEL. Mutants in this gene develops lesions on its leaves, expresses systemic acquired resistance (SAR) and develops accelerated cell death to heat shock stress. The protein has molecular chaperone activity for suppressing protein aggregation in vitro.
    Computational Description
    chaperonin 60 beta (CPN60B); FUNCTIONS IN: protein binding; INVOLVED IN: protein folding, systemic acquired resistance, cell death, response to cold, chaperone mediated protein folding requiring cofactor; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G13470.1); Has 34209 Blast hits to 34175 proteins in 8723 species: Archae - 804; Bacteria - 21846; Metazoa - 1741; Fungi - 1612; Plants - 841; Viruses - 2; Other Eukaryotes - 7363 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR