K02136

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	rosette leaf (PO:0000014)	present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02136

Determination of introduced cDNA(s)

J013074C24 - Rice Full-length cDNAs - Original: J013074C24

full reading [+] show sequence

GAAACTCCTC TCGTCCTCTC AGCCAGAGGC ATCATCTTGA TATCTCTCCC 
CATCCTCTCA CGACTCCCGA CACCAAGAAA GCAAGTATAC CATGGATTGA 
ACATATACAC GGCCGTCACA CATCTGTCTC CTTCCCTCGT CTCCTCACCA 
ATGATTCGGT CCAGAAACTT GCAGAGATCC TCTGCTAGTA CTTGCACAGA 
GCCTCAGACC GAGCACTGAG GAAGCTTAAC ATCTGCCTAT CTTCTTTCTA 
GTTCTTCCCT TTCTCTCTGT TGTTGCAGTC TTGCAGCTGC CCGATTTCGT 
GTTCTACGAG GCAATGGCAT CCTCTGCTCC TGCTTGGGTC CCCTACGAGC 
CAACGAGAGA TTGCTCTCAA GGGCTGTGCA GCATGTACTG CCCCCAGTGG 
TGCTACTTCA TCTTCCCTCC GCCGCCGCCC TTCGACGTCG CCGGCACCAG 
CGCCGACGAC TCCTCCGGCC CTGTCTTCTC CCCTCTCGTC ATTGCAATCA 
TCGGCGTTCT GGCCAGCGCC TTCCTCCTCG TCAGCTATTA CACCTTCATC 
TCCAAGTACT GTGGCACCGT TAGCTCCCTC AGGGGGAGGG TCTTCGGCTC 
GAGCTCCGGT GGCGCTGCTT ATGGCGGCGG TGCCGGTAGC GGCGGCCGCC 
ACGGCCACGG GCAGTCGAGG AGCCACGAGT CATGGAACGT CTCGCCGCCG 
AGCGGGCTGG ACGAGACCCT GATCAACAAG ATCACGGTGT GCAAGTACCG 
GCGCGGTGAT GGGTTCGTCC ACACCACCGA CTGCTCGGTC TGCCTCGGCG 
AGTTCAGTGA CGGGGAGAGC CTCCGGCTGC TACCCAGGTG CAGCCATGCC 
TTCCACCAGC AATGCATCGA CACTTGGCTC AAGTCACACT CCAATTGCCC 
CCTCTGCCGC GCCAACATCA CCTTCGTCAC CGTCGGGTTG GCGTCGCCGG 
AGCCGGAGGG CTGTGCTCCA GGCGAGACTG GAGGTGACAA TACACACGAG 
GTGGTTGTGG TGATGGATGG CTTGGAAAAT CTTTGTGAAG AGCAGCAGGA 
GGCAGTGAGC AGGGCCAGCA CTGCCGATGA TGATCACGAT GCGAAGGACG 
TCGCAGAGGG GATGGAGGAG GCCAATGGCG CAGCCGAGAT CAGAGAAGAA 
GGCTCGCCGC CAAAGAGGGG CGCGCCGTCG TTTGATCTTC ACCGTGACAA 
CCGCATGTGC ATCGCCGACG TTCTGCAGGA ATCCATGGAA GACGAGCTGA 
CGGCAGCCAG GGAGAGTGGC CTCCTCGCAG GCGGCGCTGG CACGTCAAGA 
CGGTGCCATG GCGAGAACAG CAAGGGAAGG GGAGGCCGCA GCCGACGTGC 
ATTGCAGCTG CAGGACGCCA TGGAGGCTCT GCCGGGGAAG AGATTGCCCT 
CCGGTGGGAG ATCCTGCTTC AGCAGCAAGA GCGGCAGGGG AAAAGATTCA 
GATCATCCAA TGTGAGGCGG TCAGTTCTCA TTTTCTTACT CTAGGATACT 
GGACAAGCAA CCTTTGTTTG CATGATGAGA TGCGAATGGG AAAAAATTGC 
AAGGACAATC ATCATAATCT GGAGATGTCG TCTTGTGATA ATGTTGATCT 
GCTGCCTCAC TCCATGTGAT GCCACTGCCA AATCGATCCT CTGCAGTGCT 
TGGTTGGTAA TGTCTCTTTT GTTCATAGTT GAGAAGGACC TGAGAGCTGA 
TCTCTCTCTC TCTCTCTTTT GCTCTGCCAT TTTATACATT ACATTGACTT 
CCCACCGTTC AATTTTTCTG TGGAGTTTGT TCTTCTGTGA GTTCACTAGT 
TC

Gene models with high sequence identity

AT5G17600.1 [+] show detail - RING/U-box superfamily protein
E-value: 6e-55; Score: 212.00

InterPro Scan Digest

Program	Description	E-value
HMMSmart	Zinc finger, RING-type	6.3e-08
HMMPfam	Zinc finger, C3HC4 RING-type	2.1e-08
superfamily	RING/U-box	8.6e-17
Coil	coiled-coil	0
ProfileScan	Zinc finger, RING-type	12.814
Gene3D	no description	7.5e-15
HMMPanther	RING FINGER PROTEIN 38	1e-16
HMMPanther	RING FINGER PROTEIN 6/12/38	1e-16

See the detailed result >

AT5G17600.1

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G03550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR