K02136

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02136

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02136

Determination of introduced cDNA(s)

  • J013074C24 - Rice Full-length cDNAs - Original: J013074C24

    full reading [+] show sequence

    Nucleotide sequence: J013074C24 - full reading
    GAAACTCCTC TCGTCCTCTC AGCCAGAGGC ATCATCTTGA TATCTCTCCC 
    CATCCTCTCA CGACTCCCGA CACCAAGAAA GCAAGTATAC CATGGATTGA
    ACATATACAC GGCCGTCACA CATCTGTCTC CTTCCCTCGT CTCCTCACCA
    ATGATTCGGT CCAGAAACTT GCAGAGATCC TCTGCTAGTA CTTGCACAGA
    GCCTCAGACC GAGCACTGAG GAAGCTTAAC ATCTGCCTAT CTTCTTTCTA
    GTTCTTCCCT TTCTCTCTGT TGTTGCAGTC TTGCAGCTGC CCGATTTCGT
    GTTCTACGAG GCAATGGCAT CCTCTGCTCC TGCTTGGGTC CCCTACGAGC
    CAACGAGAGA TTGCTCTCAA GGGCTGTGCA GCATGTACTG CCCCCAGTGG
    TGCTACTTCA TCTTCCCTCC GCCGCCGCCC TTCGACGTCG CCGGCACCAG
    CGCCGACGAC TCCTCCGGCC CTGTCTTCTC CCCTCTCGTC ATTGCAATCA
    TCGGCGTTCT GGCCAGCGCC TTCCTCCTCG TCAGCTATTA CACCTTCATC
    TCCAAGTACT GTGGCACCGT TAGCTCCCTC AGGGGGAGGG TCTTCGGCTC
    GAGCTCCGGT GGCGCTGCTT ATGGCGGCGG TGCCGGTAGC GGCGGCCGCC
    ACGGCCACGG GCAGTCGAGG AGCCACGAGT CATGGAACGT CTCGCCGCCG
    AGCGGGCTGG ACGAGACCCT GATCAACAAG ATCACGGTGT GCAAGTACCG
    GCGCGGTGAT GGGTTCGTCC ACACCACCGA CTGCTCGGTC TGCCTCGGCG
    AGTTCAGTGA CGGGGAGAGC CTCCGGCTGC TACCCAGGTG CAGCCATGCC
    TTCCACCAGC AATGCATCGA CACTTGGCTC AAGTCACACT CCAATTGCCC
    CCTCTGCCGC GCCAACATCA CCTTCGTCAC CGTCGGGTTG GCGTCGCCGG
    AGCCGGAGGG CTGTGCTCCA GGCGAGACTG GAGGTGACAA TACACACGAG
    GTGGTTGTGG TGATGGATGG CTTGGAAAAT CTTTGTGAAG AGCAGCAGGA
    GGCAGTGAGC AGGGCCAGCA CTGCCGATGA TGATCACGAT GCGAAGGACG
    TCGCAGAGGG GATGGAGGAG GCCAATGGCG CAGCCGAGAT CAGAGAAGAA
    GGCTCGCCGC CAAAGAGGGG CGCGCCGTCG TTTGATCTTC ACCGTGACAA
    CCGCATGTGC ATCGCCGACG TTCTGCAGGA ATCCATGGAA GACGAGCTGA
    CGGCAGCCAG GGAGAGTGGC CTCCTCGCAG GCGGCGCTGG CACGTCAAGA
    CGGTGCCATG GCGAGAACAG CAAGGGAAGG GGAGGCCGCA GCCGACGTGC
    ATTGCAGCTG CAGGACGCCA TGGAGGCTCT GCCGGGGAAG AGATTGCCCT
    CCGGTGGGAG ATCCTGCTTC AGCAGCAAGA GCGGCAGGGG AAAAGATTCA
    GATCATCCAA TGTGAGGCGG TCAGTTCTCA TTTTCTTACT CTAGGATACT
    GGACAAGCAA CCTTTGTTTG CATGATGAGA TGCGAATGGG AAAAAATTGC
    AAGGACAATC ATCATAATCT GGAGATGTCG TCTTGTGATA ATGTTGATCT
    GCTGCCTCAC TCCATGTGAT GCCACTGCCA AATCGATCCT CTGCAGTGCT
    TGGTTGGTAA TGTCTCTTTT GTTCATAGTT GAGAAGGACC TGAGAGCTGA
    TCTCTCTCTC TCTCTCTTTT GCTCTGCCAT TTTATACATT ACATTGACTT
    CCCACCGTTC AATTTTTCTG TGGAGTTTGT TCTTCTGTGA GTTCACTAGT
    TC

    Gene models with high sequence identity

    1. AT5G17600.1 [+] show detail - RING/U-box superfamily protein
      E-value: 6e-55; Score: 212.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Zinc finger, RING-type 6.3e-08
    HMMPfam Zinc finger, C3HC4 RING-type 2.1e-08
    superfamily RING/U-box 8.6e-17
    Coil coiled-coil 0
    ProfileScan Zinc finger, RING-type 12.814
    Gene3D no description 7.5e-15
    HMMPanther RING FINGER PROTEIN 38 1e-16
    HMMPanther RING FINGER PROTEIN 6/12/38 1e-16

    See the detailed result >

    AT5G17600.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G03550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR