K02141

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02141

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02141

Determination of introduced cDNA(s)

J013112A21 - Rice Full-length cDNAs - Original: J013112A21

full reading [+] show sequence

TGGGTAGCGG AAACTTGTGT CCGGTGCTCT CCGCAATCCG GTCGACGCCG 
GTCGTTTCTG GCGCTCGCGG CTCGCCAATG GCCAAACCAA CGTCGTCGTC 
CCAATAGTCC CCTTGGCGTT GTTGCCACCG CCTCCTCCCG CACCGCGATG 
CCACTCCTCG ACACCCCCTA CCTCGCCCTC CGCGTTCGCC TCCCCCGCTT 
CCCGACCCCC CACAATCCCA GACCCGCCGT TGCCATCGAA GCCCAGCACT 
CCTTTCCCCA CGGCCTGCTC GCCCGTGCCG CGTGCCAGCC GCTCCGTCAC 
GTCGCGGCTC CAGCGGAGGG GGAGGGGGAA GAGGTAGAGG ACCTCGGCAC 
GCCGTCGGCT GCGGCCGTGG CGGAGGCCAT CCGGCGTGCT TCGAGCGCGT 
CGCCGGTGCG TTTCAGGAGG GTGCACCGGG AGGAGAATGA GAAGCTGCGA 
GGAGAGGGAG GCTTCACGGA GCCCAGCACC GACTTCCGGC GACTGTGCGG 
GGAGCAGCTC GAGATGTTCC GGGTGGTCAT CTCCCGCGAC GCCGTCCTCT 
CTGTGTATTG ATTCTAGTTG GTAATTTCAC CATATCTGCT GGACTAAGAG 
CAGCGGAAGC TTTTCTTGTA AAACACCAGA TGGAAATCAT AACTGAATTT 
GGAGCTGTAG TCCTTCCAAT GGTGAAACAC CAATTTGTTG TTGGTTTCCT 
TGTTGCGGAG CTCCCAGAAC TAGTTGGATA AAGCATATTT GCTTCAGCAA 
GCTTCCTGGC AAAACAATAT TAGAATGAGT GGCTTAGTAG AACAGATTCG 
AGGACCCCTC GCTAATATAA GAGCTCTTGC AAAGATGTTA TCAGTTCATA 
CAAAGAGAAA TGAGATCTCT TATGATATTG TTGAAGACGT TATGATCCAA 
GGTGATCATT TGAAAGATGC TTTGCAACAG ATTCAAGATG CAGTTTATCT 
GACTAAGGTG AACATAGTTA GGTACAATGA GGAAACCTTA AAGAAAATTC 
AGGGGTCACC TTCTTCAAGA ACTCTACCAC ACTATCAATC AGATCCTAAG 
AATAGTTCAC AGAAAGTTGA TTCGTTGTCA TCACATGATT CTGACAATGG 
AGACATGGTG ATACCCATGC CACCTCTCTG GCTGGCCCCT CTTCAACCCC 
AAGACGCTAG GCAGACCATG TGATCTCTCT GTTGTACTGG AAGATTTGGT 
TGGAGCAGCT CAACCGCTTG CTTTTAGGCA GCAACGCACT CTAGATGTAA 
CAGGAATTTC ACACCCGCTT CAAGTTGCTG TTGAGGAATC TGCTTTAAGA 
CAAGCGCTGA GTAATCTCAT AGAGGGTGCT CTTCTACGCA CTCAGCTTGG 
TGGCCGAGTT CAGATATATG CTGGTGAAGC ACCTGCAGGA GGCATTCTCG 
TTGTCATTGA TGATGATGGT CCTGACATGC AATACATGAC ACAGATGCAT 
TGCCTTGCTC CATTCGGGTC AGACCTTGCG GATGGTATGC ATGAAGATAA 
TATGACATGG AATTTCATTG CAGGATTAAC AGTTGCCCGT GAGATACTTG 
AGAACTATGG CTGTGTTTTG CGTGTGATAT CGCCTCGGAG ACCTGATGCA 
ATTATAGGGA CTGGAGGTAG TCGTATTGAG ATATGGTTGC CAACTTCACA 
GACAGAACTA TCTGAGATCA CTGAAGGAGC TTAGCTGAAT TTTAGTAATC 
AACGCATGTT TAGAAGATAA AGGTCATGTT TAATTGGCAT GATGGAGATC 
ATACCACCTT TTCTGTTTTG GAAATGTTCG AACGACGGCT GCAAAGTGAG 
CTTATACTTC TGATTAGATC AGTCATCAGT GAAGCACCAT ATGAACATCT 
TTACACGCAT TCCAGTAAAG CATGTTACCT GTGGAAAAAG CACCATATGA 
ACACCTTTGG ACGTTTTTGT AGCATAAGGA ACTGTAGCAC GGTATACAGT 
TTGTATGGTA GAGCTAGATA CCGCACTTAT GAAAAGAAGT ACTTTTTTGT 
TGTTTCGCAG AGC

Gene models with high sequence identity

AT1G67840.1 [+] show detail - chloroplast sensor kinase
E-value: 9e-101; Score: 159.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	ATPase-like, ATP-binding domain	0.0000012
HMMPfam	ATPase-like, ATP-binding domain	0.000001
superfamily	ATPase-like, ATP-binding domain	0.00000000004

See the detailed result >

AT1G67840.1

Model type: Protein coding
Short Description: chloroplast sensor kinase
Curator Summary: Encodes a chloroplast sensor kinase (CSK) that shares common ancestors with cyanobacterial histidine sensor kinases. CSK is synthesised in the cytosol and imported into the chloroplast as a protein precusor. CSK is autophosphorylated and required for control of transcription of chloroplast genes by the redox state of an electron carrier connecting photosystems I and II.
Computational Description: chloroplast sensor kinase (CSK); CONTAINS InterPro DOMAIN/s: ATPase-like, ATP-binding domain (InterPro:IPR003594); Has 698 Blast hits to 698 proteins in 263 species: Archae - 2; Bacteria - 628; Metazoa - 0; Fungi - 1; Plants - 41; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Link: InterPro Scan - TAIR