K02143

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02143

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • variegated (PATO:0000335)
    (Rosette leaf::Color::variegated)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Original: K02143

Determination of introduced cDNA(s)

  • J013122I07 - Rice Full-length cDNAs - Original: J013122I07

    full reading [+] show sequence

    Nucleotide sequence: J013122I07 - full reading
    TTTCTTTTTT TTTTTAGTGA GTAAAGTTAA GCAGTTTGAA AATGCTGCCG 
    GATAATCTCT TTACACCCAA TTCATTTATG AGTGCTCATC TGCGAATGAC
    CTGACCAAAG CAAAGCCTTT TCATTTTGTC TTCTGACAGT AAATACAGCA
    CGTGACAAGA TAACAAAATC ATCAAACTTC TAAACGAAAC CTTGCAAAAA
    CAATGACAAT TGACAAAGTG AGAAGCAAAG CTCAACGTGC CTAGGCAGCG
    GTTTGCAATC ACCGTCTTCC CCTGCCCTTG CTCATGAAGT GGTGGCGCTT
    CAACCTCTTC TTCCGGATCA CCACGGAGGA CTTGATGTGC TCCGCGAACG
    GCATGCCAAG GAGGGTGAGC AGCCTGAGAG CCTCGTTGTC GGTCTTCGCG
    GTGGTGACGA TGCAGACGTC CATTCCATTC TTCTTCCCAC CGACCTCGTA
    CGGGATCTCC GGGAACACGC CCTGATCACG AAGGCCTATG GTGAAGTTGC
    CATGGCCATC AAAGCTGTTG GGGTTGACAC CAAGGAAGTC CATGGTCCTA
    GGAAGCCCAA GGTTGATGAG CCTATCCAGG AAGTTGAACA TTACCCTGCC
    GCGGAGCGTA ACGGCAATAC CAATGGTGTT CCCCTCGCGG ATCTTGAAAC
    TGGCGACGGA CTTCTTGGCC TTCGTCTTGA CGGGCCACTG GCCGGTGATC
    ATGGCGAGGT CCTTCATGGC GGATTCGAGC CCCTTGGAGT TACCGGCTTC
    AGCCCCCAAC CCGCAATTCA CTACAATCTT CTCAACCTTG GGCACCTGGT
    GGACATTGGT GTAGCCGAAC TCCTCGGTGA TGAGGGGGAC CACCTTCTGG
    TCGTATACAG CCTTGAGGCG GTGCACCTTC TGTGCCTCGG TGGGGTCGAC
    GAGGACGATG CCCGAAGGCG AGGTCGGCGG CGGCGCCGGC TTGGGTGGCG
    CGTCGGCCGC GGCGGAGGCG GCGACGCGGA GGGCTCGGCG AGGAGGCGGG
    GAGCGGAGGA GGAGGCGGAC GTTACGGGAG GAGGAGGCGG TGGTGGTGAC
    GGGGAAGGGG GCCGGCGAGG ACGGCAGGGT CACAGCCGTG GCCGCCATTG
    GAGCGTGCGC GGAGCAGAGG CTGCTCAGGA AGGGCGGCGC CGCTGCCGCC
    GGCGGCGGGC TCACCGTCGA GGGCTTCCAC CGCTGGCTGT GCAGCGACGC
    CAACGCTGCA CTGGATCCTC AGAAACGGGT ATATCAAGAC ATGGGATTGC
    CTCTGTCACA CTACTTCATC TACACGGGGC ACAACTCATA CCTGACGGGG
    AACCAGCTGA GCAGCGGGTG CAGCGAGGTG CCCATCGTGA AGGCCCTCCA
    CGACGGCGTC CGTGTCATCG AGCTCGACCT CTGGCCCAAC GCTGCCAAGG
    ACGCCGTCGA GGTCCTCCAC GGCAGGACGC TGACATCGCC AGTGGGTCTG
    ATGAAATGCC TTGAGGCCAT CAGGGAGTAC GCGTTCGTCG CCTCCCCTTA
    CCCCGTCATC CTCACCCTCG AAGATCACCT CACTCCCGAC CTCCAATCCA
    AAGTCGCCAA GATGATCAAG GAGACGTTCG GTGACATGCT CTACGTCTCT
    GAAACTGAGA ACATGGCGGA ATTCCCTTCG CCGGACGAGC TCAAGGGGAA
    GATCATCGTG TCGACGAAGC CGCCCAAGGA GTACCTCCAG ACCAAGAACG
    ACGCCGACGC CGACGAGGCC GGCGTCTGGG GCGAGGAGAT CACCGACGAC
    AAGGTGGCGG CGACGGCGAT GACGACAGAA GAGAAATGCG CGGCGGCGGA
    GGAAGCAGTC GCCGCCGCCG CCGTCGACGA GGAGATGCAG GAGGCCGAGA
    CGGACAAGAA GACGCAGCAC GGGGTGGACA ACGAGTACAG GCGCCTCATC
    GCCATCCCTC TGACAAGAAG AAAGCACGAC ATGGATCAGG ACCTCAAGGT
    CGATCCCGAC ATGGTGACGC GCCTCAGCCT CGGGGAGAAG GCCTACGAGA
    AGGCCATTGT CACCCATGGA GCTCACATTA TCAGGTTTAC GCAGAGGAAA
    TTGCTGAGGA TATTCCCTCG GTCGACGCGC ATTACGTCTT CGGATTATAA
    TCCTTTGATG GGTTGGAGGT ATGGAGTTCA GATGGTTGCA GCAAACATGC
    AGGGCCATGG AAGAAAGCTG TGGCTGACTC AGGGGATGTT CCGAGCAAAC
    GGCGGTTGCG GTTACGTCAA AAAGCCTGAT ATTCTGATGA ACAACGATCC
    AGATAAACTG TTTGATCCTA CATCCAAACT ACCAGTAAAG ACAAGACTAA
    AGGTGACGGT GTACATGGGA GACGGATGGC GATTCGACTT CCGCAAGACA
    CATTTCGACA AATGCTCACC CCCAGACTTC TATGCAAGGG TGGGTATAGC
    CGGAGTAGAA GCAGACACGA GGATGGAGCA GACGAAGGTG AAGATGGACA
    CGTGGATTCC GGCATGGGAT CACGAGTTCG AGTTCCCGTT GAGCGTGCCG
    GAGCTGGCGC TGCTCCGGGT GGAGGTGCAC GAGTCCGACA ACCACCAGAA
    GGACGACTTC GGCGGGCAGA CCTGCCTGCC GGTGTGGGAG CTCCGGCGAG
    GCATCCGCTC CGTCAGGCTC TGCGACCACC GCGGCGAGCC CCTCCGCTCC
    GTCAAGCTCC TCATGCGCTT CGACTTCACC TGACTACTCC ATCTTCTTCT
    TCATCATCGT CATCGTCTTA GTAGTAGTAG TTCCATGTAT GATATCATGA
    GGGATGAAGC ATTGATCGTA CTTTCTCCGT CCCGAAATAT AGCAATGTAG
    GATTAGATGG AAACATCTTA ATACTACGAA TCTGGATATG TCCTATCTGG
    TTCTGGTTTG CTATGTTTTA GGACGAATAT AGTACATAAA ATTTTAGAAG
    TTTTGTTTTA AAAAAG

    Gene models with high sequence identity

    1. AT3G08510.2 [+] show detail - phospholipase C 2
      E-value: 7e-162; Score: 568.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Phospholipase C, phosphatidylinositol-specific , X domain 5e-67
    HMMSmart Phospholipase C, phosphatidylinositol-specific, Y domain 4.1e-45
    HMMSmart C2 calcium-dependent membrane targeting 1e-11
    HMMPfam Phospholipase C, phosphatidylinositol-specific , X domain 1.2e-48
    HMMPfam Phospholipase C, phosphatidylinositol-specific, Y domain 3.3e-26
    HMMPfam C2 calcium-dependent membrane targeting 1.4e-12
    HMMPfam Phospholipase C, phosphoinositol-specific, EF-hand-like 7e-06
    HMMPfam Ribosomal_L5_C 1.4e-30
    HMMPfam Ribosomal_L5 3.7e-21
    PatternScan Ribosomal protein L5, conserved site 0
    superfamily PLC-like phosphodiesterase, TIM beta/alpha-barrel domain 9.7e-112
    superfamily C2 calcium/lipid-binding domain, CaLB 4.5e-24
    superfamily Ribosomal protein L5 1.8e-66
    Gene3D PLC-like phosphodiesterase, TIM beta/alpha-barrel domain 1.5e-99
    Gene3D no description 5.7e-35
    Gene3D Ribosomal protein L5 7.8e-64
    HMMPanther 50S RIBOSOMAL PROTEIN L5 3.4e-193
    HMMPanther Ribosomal protein L5 3.4e-193
    HMMPanther PHOSPHOLIPASE C 7.5e-290
    HMMPanther PHOSPHOLIPASE C 7.5e-290
    FPrintScan Phospholipase C, phosphoinositol-specific, C-terminal (PLC) 4.8e-40
    FPrintScan Phospholipase C, phosphoinositol-specific, C-terminal (PLC) 4.8e-40
    FPrintScan Phospholipase C, phosphoinositol-specific, C-terminal (PLC) 4.8e-40
    FPrintScan Phospholipase C, phosphoinositol-specific, C-terminal (PLC) 4.8e-40
    FPrintScan Phospholipase C, phosphoinositol-specific, C-terminal (PLC) 4.8e-40
    FPrintScan Phospholipase C, phosphoinositol-specific, C-terminal (PLC) 4.8e-40
    ProfileScan C2 membrane targeting protein 12.691
    ProfileScan Phospholipase C, phosphatidylinositol-specific , X domain 42.969
    ProfileScan Phospholipase C, phosphatidylinositol-specific, Y domain 33.415

    See the detailed result >

    AT3G08510.2

    Model type
    Protein coding
    Short Description
    phospholipase C 2
    Curator Summary
    Phosphoinositide-specific phospholipase C (PI-PLC), catalyzes hydrolysis of phosphatidylinositol 4,5-bisphosphate into inositol 1,4,5-trisphosphate and diacylglycerol.
    Computational Description
    phospholipase C 2 (PLC2); FUNCTIONS IN: phospholipase C activity; INVOLVED IN: signal transduction, intracellular signaling pathway, lipid metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphoinositol-specific, EF-hand-like (InterPro:IPR015359), Phospholipase C, phosphatidylinositol-specific , X domain (InterPro:IPR000909), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase C, phosphoinositol-specific (InterPro:IPR001192), Phospholipase C, phosphatidylinositol-specific, Y domain (InterPro:IPR001711), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Phosphoinositide-specific phospholipase C family protein (TAIR:AT3G55940.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR