K02230

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02230

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02230

Determination of introduced cDNA(s)

  • J033034K16 - Rice Full-length cDNAs - Original: J033034K16

    full reading [+] show sequence

    Nucleotide sequence: J033034K16 - full reading 
    GAATTCATCC CCAAGTCCAC CACCACACAC ACACACACAC GCACACCACT 
    CCTCTCCCCA CAACCCATCC ACTCCCACGC CGCCGCCGCC GCCCGGATCG 
    CCGCGAGATG GAGCAGTACG AGAAGGTGGA GAAGATCGGG GAGGGGACGT 
    ACGGGGTGGT GTACAAGGGC AAGCACCGGC ATACCAACGA GACGATCGCG 
    CTCAAGAAGA TCCGCCTGGA GCAGGAGGAC GAGGGCGTCC CCTCCACCGC 
    CATCCGCGAG ATCTCGCTGC TCAAGGAGAT GCAGCATCGC AACATCGTCA 
    GGCTGCAGGA CGTCGTGCAC AAGGAGAAAT GCATATACCT CGTCTTCGAG 
    TACCTCGACC TTGACCTCAA GAAGCACATG GACTCATCCC CGGATTTCAA 
    GAACCACCGC ATAGTCAAAT CGTTCCTCTA CCAGATTCTC CGGGGCATTG 
    CGTACTGCCA CTCGCACCGT GTTCTCCACC GAGATTTGAA GCCCCAGAAC 
    CTGCTGATAG ATCGGCGTAC CAACTCATTG AAGCTCGCGG ACTTTGGGTT 
    GGCCAGGGCA TTTGGCATTC CTGTCCGGAC ATTTACTCAC GAGGTGGTGA 
    CATTGTGGTA TAGAGCACCT GAAATTCTTC TTGGTGCAAG GCATTATTCC 
    ACCCCTGTTG ACATGTGGTC AGTTGGTTGC ATTTTTGCTG AAATGGTGAA 
    TCAGAAGCCA CTATTTCCTG GAGATTCTGA GATTGATGAA CTCTTTAAGA 
    TTTTCAGTAT TATGGGCACT CCAAATGAAG AAACTTGGCC AGGTGTTGCT 
    TCACTACCTG ACTACATATC AACTTTCCCA AAGTGGCCAT CTGTGGATCT 
    TGCAACCGTG GTCCCAACAC TTGATTCTTC AGGACTCGAT CTTCTCTCTA 
    AAATGCTCCG TTTAGATCCA AGCAAAAGAA TCAATGCCCG TGCTGCCCTC 
    GAGCACGAGT ACTTCAAGGA CCTGGAAGTG GCGTAGATTA TGCCTCATCT 
    TGTCCATTTG TAAATTAAGA TTGCATTGTT TGCTCAGCCG AGTTCTTTTT 
    TGGCTTTCCT TAATCTAAGT TGGTGTGCTC CTCCCCCAAC TCTATTTTTG 
    CCCTTTTGGT TGTGTAGAGA TGAGAACAGA AGGTACCTCC TGGCTATCCC 
    TCTGTGTAAT TCAAGCCAAT TGAAAGATCC TTATTGCGGG AGCCC

    Gene models with high sequence identity

    1. AT3G48750.1 [+] show detail - cell division control 2
      E-value: 4e-142; Score: 501.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    HMMSmart Serine/threonine-protein kinase domain 1.5e-102
    HMMSmart Tyrosine-protein kinase, catalytic domain 0.000000000022
    Gene3D no description 1.3e-68
    superfamily Protein kinase-like domain 2.3e-91
    HMMPanther CELL DIVISION CONTROL PROTEIN 2 (P34 PROTEIN 1.3e-171
    HMMPanther CDC2, MAP KINASE-RELATED 1.3e-171
    HMMPfam Serine/threonine-protein kinase-like domain 1.6e-78
    ProfileScan Protein kinase, catalytic domain 47.849

    See the detailed result >

    AT3G48750.1

    Model type
    Protein coding
    Short Description
    cell division control 2
    Curator Summary
    A-type cyclin-dependent kinase. Together with its specific inhibitor, the Kip-related protein, KRP2 they regulate the mitosis-to-endocycle transition during leaf development. Dominant negative mutations abolish cell division. Loss of function phenotype has reduced fertility with failure to transmit via pollen. Pollen development is arrested at the second mitotic division. Expression is regulated by environmental and chemical signals. Part of the promoter is responsible for expression in trichomes. Functions as a positive regulator of cell proliferation during development of the male gametophyte, embryo and endosperm. Phosphorylation of threonine 161 is required for activation of its associated kinase.
    Computational Description
    cell division control 2 (CDC2); FUNCTIONS IN: protein binding, protein kinase activity, cyclin-dependent protein kinase activity, kinase activity; INVOLVED IN: in 8 processes; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cyclin-dependent kinase B1;2 (TAIR:AT2G38620.2); Has 126125 Blast hits to 124135 proteins in 4221 species: Archae - 112; Bacteria - 14002; Metazoa - 46757; Fungi - 13170; Plants - 30525; Viruses - 484; Other Eukaryotes - 21075 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR