K02236

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02236

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02236

Determination of introduced cDNA(s)

  • J023086M03 - Rice Full-length cDNAs - Original: J023086M03

    full reading [+] show sequence

    Nucleotide sequence: J023086M03 - full reading 
    GTGTGTGCGC CCTTGTTGAT TGCTCTTGTT TCTGCCAGGT TTCCTTGTTA 
    GGCTCTAGTT TTGCTCGTTG TTTACTGTAA ATTCCCATGT ATATTAAGTT 
    TGTGCAGTGC GCTGTCAGCT TGGCAAATGG GCTTTTCATT TCCTGATCGA 
    AAAAAAAAAC AAACCTGTGA TTAACAAGGG GAAATTACCT TCACTGTGCC 
    TATTGGCATC ATTCCAAGTT ATTCATGCTT TAGTTCCTAG CCATTAACTT 
    AAGATAGAAA TAAGATCCTG CCAGTTCACT AGTTTTCTTG TCAGTTTGAT 
    ATATACTTTG ATCTTGTCTT TTCTGGTTGT TTTCCTTAAT TTTGTCTGTG 
    TTGTTCTAGT GCTTAATTAG TTGCCTCTCA GTTCTTCACA TTCTATGTTT 
    TTGAGTAAAA CTCTGTCCAT ATGGCCGTTC TGTTATGTAT CTCAGCAATC 
    TGCTTATATT TTTTTTTTTT GCATCCCCAC ACAATTCTAT TTGACGTTGT 
    AAAAAAGAAG AGAGATAGCT AGATAAGCGC AACTGATGCT CTATACTTAG 
    TTTCACGGTT CTTGGTTTAA TGCCTAAAAA TTGTGCACTA TCAGTACTTC 
    AATTATGTTA TCTAGTAGTG TTTTGTCTCC TCTGAATAAT GCCTGCCATT 
    CTTATGCTGC TCTACTGCTG AGAAAACTAC ACTATTTGAA TTACTGATTG 
    CTAATTATGT TTCGATTAAC AGCATAAAGG AACATTTTGT TGATGTTCTA 
    ATGGAGTCAA AAGGTGGCAA AAAGAAGTCT AGCAGTAGTA GTTCCATGTA 
    CGAAGCTCCC CTAGGCTACA AGATTGAGGA CGTTCGCCCA GCCGGAGGAA 
    TCAAGAAGTT CCAGTCTGCT GCTTACTCCA ACTGCGCTCG CAAGCCATCC 
    TGATATTCCT TCACATGCCT TTCCCCGTAG AGTAGGAATT TCCTGCAATT 
    TTTCCTTTGT TTTGTTGCAA TAAATCTCCC TTGGCTGGCT GCTTTCTCAA 
    TCTCTTCCCT TGTCTTCTCC GATCTCTTCT TTCCTGTCTT GTCCACTGCT 
    CCTTGCAACA CTTGATCAAA TGTCGATGTC CTTGGCTGAT TCTTGGGGCT 
    CTGCCCCTGC CTCGCCCATT GGGTTTGAAG GCTATGAGAA GCGCCTTGAG 
    ATAACATTGT CTGATGCGCC CGTCTTTGTG GACCCCTGTG GTCGCGGCCT 
    TCGTGCCCTC TCACGTGAGC AGATCGACTC GTTCTTGGAT CTTGCAAAGT 
    GTACCATTGT ATCCCATCTT TCGAACAAGC ACTTCGACTC ATATGTGCTT 
    TCAGAGTCGA GCCTTTTTGT TTATCCCCAC AAGGTTGTTC TGAAGACCTG 
    TGGTACAACA AAGCTTCTGC TCTCCATTCC TCGCATCCTT GAGCTTGCTG 
    CAGAGTTGTC ACTGCCTGTT CTATCAGTGA AGTACTCTCG TGGGATGTTC 
    ATCTTCCCTG GAGCGCAGCC GTCACCGCAT CGCAGCTTCT TGGAGGAGGT 
    TTCTGTGCTC AACAGCTTCT TTGGTGGCCT CAAGTCAGGT GGCAATGCTT 
    ATGTCATTGG TGATGCATTC AAGCCCGAGA AGAAGTGGCA TGTCTAATGT 
    GCCACAGAAG AGCCTGAGCA GCCCATGGTT ACACTCGAGA TGTGCATGAC 
    TGGGCTGGAT GCTAAGAAAG CTGAGGTGTT CTTCAAGGAT TCCACTGATG 
    GCTCCTGCTC ATCAGCTAAG GAGATGACTA TGTTCTCTGG GATTTCTGAA 
    ATCATCCCTG AGATGGAGAT TTGTGACTTT GAGTTTGACC CGTGTGGGTA 
    CTCAATGAAT GGCATTTATG GTCCCGCCGT CTCCACGATC CATGTCACTC 
    CTGAGGAAGG TTTCAGCTAT GCAAGCTATG AAGCAATGAA CTTCAATCCT 
    AGCTCCTTGG TCTACGATGA TTTGATCAAG AAGGTCCTGG CTTGTTTCTG 
    CCCTTCAGAC TTTTCGGTCG CTGTTACCAT CTTCGGTGGG CATGGTTTTG 
    CCAAATCATG GGCAAAAGGT GCAGAGGTTG ATTCCTACAT GTGCGATGAT 
    CTTGTTGAGC AAGAGCTTCC TGGTGGCGGT GTGCTGATGT ATCAGAGTTT 
    TACTGCTGTT ACTCCTGGTG CTGTGTCACC GAGGTCGACC TTGGATGGCT 
    GGAACAGCGA TGGAGCAGAG ATGGTTGCGA AGAGCAAAGA GATGAGTGTC 
    TGCTGGGAAG GAGAGAAGGC GGCGAAGAAG AGAGATGCAG ATGCCTGAGA 
    AATCGGCAGT TCTTCAACCT CAAGTTGCAA GTTTGATTCA TCTGAAGTTT 
    CTGAGACGCC TTATTTGGTT CTGCTCTTGC AGTTTCGGTT AAGCAGCTGG 
    CTGGGCTACC GGCAAAGCAT ATGTTACTTG TTCATTGTTC TTTTATATCT 
    GTCTGCCCAA ATAAGTGCTC TAGATGGTTT GCTGCGTCTG CCATAGTGAG 
    CAATTCAGAT TGTAGTAGAA TTCTTATCTG TTGCCGATGC TCTTTAAGGG 
    AGAATGATAT GTAACTCGAT TATTTTCAAT AACTATTGCA ACTTCC

    Gene models with high sequence identity

    1. AT3G25570.2 [+] show detail - Adenosylmethionine decarboxylase family protein
      E-value: 2e-94; Score: 343.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily S-adenosylmethionine decarboxylase, core 1.9e-65
    superfamily S-adenosylmethionine decarboxylase, core 1.8e-52
    PatternScan S-adenosylmethionine decarboxylase, conserved site 0
    Gene3D S-adenosylmethionine decarboxylase, core 4.8e-59
    Gene3D S-adenosylmethionine decarboxylase, core 2.6e-47
    HMMPanther S-adenosylmethionine decarboxylase 2.8e-48
    HMMPanther S-adenosylmethionine decarboxylase 1e-75
    HMMPfam S-adenosyl-l-methionine decarboxylase leader peptide 7.1e-30
    HMMPfam S-adenosylmethionine decarboxylase 1.1e-64
    HMMPfam S-adenosylmethionine decarboxylase 2.5e-50

    See the detailed result >

    AT3G25570.2

    Model type
    Protein coding
    Short Description
    Adenosylmethionine decarboxylase family protein
    Computational Description
    Adenosylmethionine decarboxylase family protein; FUNCTIONS IN: adenosylmethionine decarboxylase activity; INVOLVED IN: spermidine biosynthetic process, spermine biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine decarboxylase, core (InterPro:IPR016067), S-adenosylmethionine decarboxylase, conserved site (InterPro:IPR018166), S-adenosylmethionine decarboxylase (InterPro:IPR001985), S-adenosylmethionine decarboxylase subgroup (InterPro:IPR018167); BEST Arabidopsis thaliana protein match is: S-adenosylmethionine decarboxylase (TAIR:AT3G02470.4).
    Link
    InterPro Scan - TAIR