K02307

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02307

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02307

Determination of introduced cDNA(s)

  • J023127M12 - Rice Full-length cDNAs - Original: J023127M12

    full reading [+] show sequence

    Nucleotide sequence: J023127M12 - full reading 
    TTGGGTACTC TTTGCCCTCG ATCGAAGCTA CCACCCATCC CACCTTGCCC 
    TTCCTTCGCC GCCGATTCCG ATCTGGGCCG CCGGCGACGG CGAAACACAG 
    GCAAAGCAAA GATAAAGGTA CAACTGTTGT TTGGTGCTTG TCCAGCTAGG 
    ACAGCCGAGT GAAGTGCCAG CATGGGTGGC ATCCTTGGAC GCCATGACAC 
    CATGAAGAGG AGCTCTCACG GCTCGAAGCT CGAGACGAAG ATGGTGGAGT 
    CCATGCAGCA GAGAGCGTCG CACGGGACTT CACTCAAGTC GTTCGATAGC 
    ATCATCATGA AGTTTCCGAA AATCGATGAG AGCTTGAGGA AATGCAAGAT 
    CATCTTCGAG CAATTCGATG AAGATTCCAA TGGCGAAATA GATAAACAAG 
    AATTGAAGCA TTGTTTCCAA AAGTTGGAAA TTTCATTCAC AGAGGAGGAG 
    ATAAATGACC TCTTTGAAGC TTGTGATATA AATGAAGACA TGGGCATGAA 
    GTTCAATGAG TTCATCGTCT TTCTGTGCCT CATTTATCTG CTCAACGAAC 
    CAGCTGTGTC AGAAGCAAAG ATTAAGATGG GATTAGGAAA TCTTGAGGCA 
    ACTTTTGAGA CCTTGGTTGA TGCATTTGTT TTTTTGGATA AGAACAAAGA 
    TGGATATGTC AGTAAGGAAG AGATGGTTCA ATCAATGAAT GAGACTGCAA 
    CAGGGGAACG CTCTTCTGGG CGTATAGCCA TGAAAAGATT TGAGGAAATG 
    GACTGGGACA AGAATGGAAT GGTGACCTTC AAAGAATTTC TGTTTGCATT 
    CACTCGCTGG GTTGGGATTG ACGAAAATGA GGACGACAAT GAATGAATTT 
    CGTGAAGATA AGTTGTTCAA TTATTAGGAC CTGGCCAGCC TAAGGAGGTT 
    ATAAAGTTTG GTGGTAATGA CAACTGGAGC ATATGATGTT GATTAGTTGA 
    TCGTTGATAT TGTGTATTAT CTTATAGGAT GATTCAACAT GATCCTAGTA 
    GAATATCTTA ACATGCCTGA AGACTCCATG TATGCTTACA AATTTAAAGA 
    GTTCCATGAC AGATAGATCT GAACTTGTAC AGTAATTCTA ATGGTTGTAC 
    TTACCAATAT CCTGGACTTG ATGTGGAGAA ATGCTATAAT TCAGTTGCAT 
    GCTCAACGAA AATAAGATCA TATCTTTATG TT

    Gene models with high sequence identity

    1. AT4G26470.1 [+] show detail - Calcium-binding EF-hand family protein
      E-value: 4e-80; Score: 295.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily EF-hand 2.8e-30
    Gene3D EF-hand-like domain 1.8e-23
    PatternScan EF-Hand 1, calcium-binding site 0
    PatternScan EF-Hand 1, calcium-binding site 0
    HMMPanther UNCHARACTERIZED 1.3e-70
    HMMPanther CALMODULIN 1.3e-70
    HMMPfam EF-hand 0.0000037
    ProfileScan EF-HAND 2 13.286
    ProfileScan EF-HAND 2 8.042
    ProfileScan EF-HAND 2 11.389
    ProfileScan EF-HAND 2 10.273
    HMMSmart Calcium-binding EF-hand 0.0032
    HMMSmart Calcium-binding EF-hand 26
    HMMSmart Calcium-binding EF-hand 0.041
    HMMSmart Calcium-binding EF-hand 2.8

    See the detailed result >

    AT4G26470.1

    Model type
    Protein coding
    Short Description
    Calcium-binding EF-hand family protein
    Computational Description
    Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cytoplasm; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT3G24110.1); Has 9300 Blast hits to 7546 proteins in 1004 species: Archae - 0; Bacteria - 25; Metazoa - 3748; Fungi - 1101; Plants - 3090; Viruses - 0; Other Eukaryotes - 1336 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR