K02317

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02317

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02317

Determination of introduced cDNA(s)

  • J013098F16 - Rice Full-length cDNAs - Original: J013098F16

    full reading [+] show sequence

    Nucleotide sequence: J013098F16 - full reading 
    GAGAGAGCGC AGACGCGAGC GCAGCGCAAA AGATGGCGAC GATGTCCCTC 
    GCCGCGGCGT CCCCCCTCGC CTCGACTCCC CGTGGGCTCG CCGTCTCCAC 
    TCCCCGCACG GCCTTCCTCG GCCTCCTGAC CGGAGGGGCG TCGCTGGCGC 
    CGTTCCCGGG ACTGGCGGCG GCGGCGGCGC CGCCGCGGCT GCCAGCGGGG 
    AGGGGCGACG CGGCCGTGGC CAGGATGGCG AAGAGGGAGC AGGAGCTGGA 
    GGAGATTCGG GCCATGCCGA CGGAGAAGAT CGAGGAGGAA GTGGTGGACC 
    TGAAGGGGGA GCTCTTCATG CTCCGCCTCA AGCGCTCCGC GCGCCAGGAG 
    TTCAAATCCA GCGAGTTCGG CCGCATGCGC AAGAGGATTG CTCGTATGCT 
    GACTGTCAAA AGAGAACGGG AAATTGAACA AGGAATCAAC AAGAGATTGT 
    CTAGGAAGCT TGACAGGAAA TGGAAGCAAA GCATCGTGGT TAGACCACCA 
    CCATCTCTAA GGGAGAACAA GGAGGAATAG AGAGCCACAA AAGCAGACAG 
    TCTGTAGAAG TCATTTCATG CATGTCTTGA AGGAAGGTTT CTTTCTCCCT 
    GTGGTTTCAT TCCTTATAAT GGATTGATAT GTAATTCACA TTAACTGATT 
    TCCAAGTCCT TGCTGTCAAA ACCAAAAGTT CTATTACCAA TTCCATTTGT 
    GTAAATTTCA GTTTATTCAA AATGTGTTGT CCATATATGC ACTTATATTA 
    CTGATATATG AAACTGTGCT TAACGAGTGT ATGCTATACA CTTGTTGAAA 
    CTCAAACTGC CTATTCAAAT TCACCTGTCA CAAAGTTGTG GGTACGTACA 
    TACTATAAGA GGCAGATATG CAGAGTTCTA AAGAAGTGTC TCTGGAATAC 
    GGAGTAACAA AAACAAGAGA ATTAGGCCAT GTCTATAATA GTTCGCTTGG 
    AATTTTGGTG CCCTGCTTTG CTCCAAACTC AAGTTCACTG TTTTATCAAA 
    CGTTTCAAAA CTGTACAACT GTCTCCAAGC CCACGTTCTT GTGGCTTGTT 
    GTGTCGGTCA CCTAGATTTA TGTTATTGTT CAACACTGAT TTATGCTTAA 
    ACTAGCTCTG TTAGACTGTC CTAAAGCATG TTGGGCTTTC CCCTTCTACT 
    CTAGCTTTAG AGTATGCTGC AGGTATCTCT GCACAGAGCT AGGGAGCCAT 
    CCTAGATCCA TCATCAGTTT CATAAGCAAG CCCAGGTGGC TTGGCCCTTC 
    AGCCAAAACT TGTTATTCTG ATCTCTTCAA CAGATCTTAA CTTGAGATGT 
    AGAGAGGCTT CACTCACAAG GTAATCTTTT AGTCAACTAT TGTCTTCCTC 
    TTTTTTTAGC TAATTGTTTA GTGAGCAGAG TACTGAGTTG GTGATTGTTT 
    GAAGATAAAT GCCAACAAGT AGAAATAGCA TCCATGCAAT TCTTTTGTTG 
    AAAGTCTCAA GTCATCAAGG TCGAAGTGAT GTTGCTGATA ATTTGGTTGG 
    GTAGATAAGA AATGAAATGA AGAGGATATC AGCCCCAGTT AATTGCAGCA 
    ATTTTATTTC AAACGCCATG CCTTGTCTTT GTTATGCCTT TTGGCACTGA 
    GCCGCTGACT CTCTCACTGA CAGGTGTGGT TCAGGCCCAA TGCCACTGAG 
    AGAAGCTAAT GGCAAAATCT TAACTGCAAC TTGAATCTAT AGCAAGAACA 
    AGATTTCCAC TAGTTCAGTT TGTCCAGTGT TTTTCATGCC TTGAATAGGG 
    TGGTGCATTC AATTACCCAA ATTAGATTTG TTTCGCACGG ACTAGTTGTG 
    GTTTAAAATC TTCAGGATGA ATTTCATTTT GT

    Gene models with high sequence identity

    1. AT5G65220.1 [+] show detail - Ribosomal L29 family protein
      E-value: 1e-37; Score: 154.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Ribosomal protein L29 6.1e-13
    HMMPfam Ribosomal protein L29 2.6e-16
    Gene3D Ribosomal protein L29 2.3e-06
    HMMTigr Ribosomal protein L29 5.2e-16

    See the detailed result >

    AT5G65220.1

    Model type
    Protein coding
    Short Description
    Ribosomal L29 family protein
    Computational Description
    Ribosomal L29 family protein ; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, chloroplast stroma, chloroplast, nucleoid, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L29 (InterPro:IPR001854); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR