K02318

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	rosette leaf (PO:0000014)	increased length (PATO:0000573) (Rosette leaf::Shape::long) present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02318

Determination of introduced cDNA(s)

J033027E22 - Rice Full-length cDNAs - Original: J033027E22

full reading [+] show sequence

GACGAAGACA AAGTCAGAGG TCACACAGCT CATCGTCTCG AGCTACCTAG 
CTGGAAGAAG AAGAGGAAGA AGAGGAGGAG GAGCTCGTCG GAGTTTAGTT 
GGTGAGTTCG CCGGAGAGAT CGATCATGGA GAATCTGAAG GCGACGGAGC 
TGAGGCTCGG GCTGCCGGGG ACGGAGGAGG AGGCGGCGCC GCCGCCGTCG 
ACGCCCAGGG CCGGAAGCAA GCGCGCCCTC GCCGGCGAGC CTGATCAGGC 
CAAGATCAAG CCCGCCGCCG CCGCCAAGGC GCAGGTGGTG GGATGGCCGC 
CGGTGAGGTC GTACAGGAAG AGCTGCCTCC AGCCGACGAC GACGACGACG 
AAGAGCAAGC CGCCGCCGGC TGCCGCGGCG GCGGAGACGC AGCAGAAGGA 
GGATGTCGCC GGCGCCGGTG GGCTGTTCGT GAAGGTGAGC ATGGACGGAG 
CTCCATACCT GAGGAAGATA GACCTCAAGG TGTACAAGGG CTACCGGGAG 
CTTCGCGAGG CACTGGAGGC CATGTTCCTC TGCTTCTCCG GCGGCGCCGC 
CGCCGACGCC GCCGTCAACC CGTCCGACTT CGCCGTCACC TACGAGGACA 
AGGACGGCGA CCTCATGCTC GTCGGCGACG TCCCATTCGA GATGTTCATT 
AGTACGTGCA AGAGGTTGAG GATCATGAAG GGGTCTGAAG CAAGAGGCCT 
AGGAGCAACA AGGGGTTAAA AACTGAACAA CAACAAGAAG AAATCATCAT 
CATGTGTGCA TGAGCAATTC TTTTGTTCTT TTTGGGTTCT CCAAGACATG 
CAATCATCTC ATCTCCTCAT TGCAACCTTC AAGAAAGAGA GAGAGAGAAA 
GAAAAGGAAA GCAAAAAAAA AAAAGATGCA GTGAAAAAAA TATGTGAAGC 
TTAATTGGAG TCATCAGATT GCAAAGCATG CATGCATGTG TGGATGTGTG 
GCTTTAATTT GTTTTTTTCC TCTTAATTAG GTGTTAGAAA ACACAGAAGG 
AATGGAGGTT CGAGTTGAGC CTCCATGTGT GTTTGTACAA AGCAAACATC 
TTTTTTCTTT TACATGAATG GTTGATTACT TTTGTAACTG GAGGGAAGAA 
GAATGCATGT ATGCATGGGC TGTGTGTACT TCTCCCTCTG GCTTCAATGC 
TTTGATTTCC ATCCG

Gene models with high sequence identity

AT1G04240.1 [+] show detail - AUX/IAA transcriptional regulator family protein
E-value: 7e-40; Score: 161.00

InterPro Scan Digest

Program	Description	E-value
ProfileScan	Aux/IAA-ARF-dimerisation	28.169
Coil	coiled-coil	0
HMMPfam	AUX_IAA	2.9e-57
superfamily	CAD & PB1 domains	0.00000000004

See the detailed result >

AT1G04240.1

Model type: Protein coding
Short Description: AUX/IAA transcriptional regulator family protein
Curator Summary: SHY2/IAA3 regulates multiple auxin responses in roots. It is induced rapidly by IAA, and has been shown to be phosphorylated by oat phytochrome A in vitro.
Computational Description: SHORT HYPOCOTYL 2 (SHY2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, response to cyclopentenone, response to brassinosteroid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: AUX/IAA transcriptional regulator family protein (TAIR:AT5G43700.1); Has 1823 Blast hits to 1821 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1822; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link: InterPro Scan - TAIR

J023019K12 - Rice Full-length cDNAs - Original: J023019K12

full reading [+] show sequence

GGCTTCTAGA GCCTCCTCGC GTCTTCTCCT CTCTCATCAA ATCCCCTCGC 
CCTCCTCTCT TTCCTCCTCC CCAAGAAAAA AAAAGGCTTC ATAGCTCAAC 
CTCCTCGCCG CCGCCGCTCA CCTCCCCTCC CCTCCCATCC CTCCTCCTCC 
CTAGCCCCAG GTCGCTGCTC GGCTCCGCCA TGTACCGCGC GGCCGCCAGC 
CTCGCCTCCA AGGCTCGGCA AGCCGGGAGC AGCGCTCGCC AGGTTGGAAG 
CAGGCTTGCC TTGAGCAGGA ACTATGCTGC CAAGGATATC AAGTTTGGAG 
TTGAGGCCCG TGCTTTGATG CTGAGGGGTG TTGAGGAGTT GGCAGATGCA 
GTCAAAGTGA CAATGGGTCC TAAGGGACGC AATGTGGTTA TTGAGCAGAG 
CTATGGTTCA CCGAAAGTCA CAAAGGACGG TGTGACTGTT GCCAAGAGCA 
TTGAGTTCAA GGATAGAGTC AAGAATGTTG GTGCAAGCCT TGTAAAGCAG 
GTTGCTAATG CGACCAATGA TACTGCTGGA GATGGTACCA CTTGTGCTAC 
TGTATTGACT AAAGCAATAT TTACTGAGGG GTGCAAGTCT GTTGCTGCTG 
GCATGAATGC AATGGATTTA AGGCGTGGTA TTTCAATGGC TGTTGATGCT 
GTTGTAACTA ACCTAAAGGG CATGGCTAGA ATGATCAGCA CATCAGAGGA 
AATAGCTCAG GTGGGCACAA TATCAGCAAA TGGGGAAAGG GAAATTGGTG 
AGCTTATTGC AAAGGCTATG GAGAAGGTTG GCAAGGAGGG TGTAATCACC 
ATTGCGGATG GTAACACCCT TTACAATGAG CTTGAAGTTG TGGAAGGCAT 
GAAACTTGAC AGAGGCTACA TCTCTCCTTA CTTTGTTACC AACCCAAAGA 
CCCAGAAATG TGAACTGGAT GACCCCTTGA TCCTGATACA TGACAAGAAG 
GTTTCGAACC TGCATGCAGT AGTTAAAGTC TTGGAGTTGG CTCTGAAGAA 
GCAAAGGCCT CTGCTGATTG TTGCTGAAGA TGTAGAGAGC GAGGCATTGG 
GTACTCTGAT TATTAACAAG CTTCGTGCAG GCATCAAGGT CTGTGCTGTT 
AAAGCTCCTG GGTTTGGGGA GAACAGGAAA GCAAACTTAC AGGACCTTGC 
GATCCTTACT GGAGGAGAAG TCATAACTGA AGAGCTAGGA ATGAATCTTG 
AGAAGTTCGA GCCTCAGATG TTGGGTACAT GCAAGAAGGT AACTGTATCT 
AAGGACGACA CTGTTATTCT TGATGGAGCT GGAGACAAGA AATCCATTGA 
AGAGAGGGCT GAGCAGATTA GATCTGCAAT TGAGCTAAGC ACTTCTGATT 
ATGACAAGGA AAAGCTACAG GAGCGGTTGG CAAAGCTCTC CGGAGGTGTT 
GCTGTTCTAA AGATCGGAGG AGCCAGTGAA GCTGAAGTTG GTGAGAAGAA 
GGATAGAGTG ACAGATGCAT TGAATGCCAC TAAAGCTGCT GTGGAAGAGG 
GTATTGTACC AGGTGGAGGT GTTGCACTTC TTTATGCATC AAAGGAGCTG 
GATAAATTGC CGACTGCTAA CTTTGATCAA AAGATTGGTG TACAAATCAT 
TCAGAATGCT TTGAAGACAC CGGTGCACAC TATTGCTTCC AACGCAGGTG 
TAGAAGGGGC TGTTGTTGTC GGTAAGCTTT TGGAACAAGA TAACACCGAC 
CTTGGCTATG ATGCGGCTAA AGGTGAATAT GTGGACATGG TGAAGGCTGG 
TATCATTGAC CCACTAAAAG TGATCAGAAC TGCCTTGGTG GATGCTGCAA 
GCGTATCATC TCTGATGACA ACCACGGAAT CCATCATCGT AGAGATCCCA 
AAGGAAGAGA AGGAGGCGCC AGCGATGGGA GGCATGGGTG GAATGGATTA 
CTAATCAACA CCCATTAAAG TAAACTAAAA ACATACTCCT GGGATTTAGG 
ATTTTTTTTG CGGTGCAAGT TCATCGTCGA TGTATTTTTT GTTCTTGTTG 
ATGAGGTGGT TGTCAGACAA TTTTGATTCC ACTGGCGGTA GGACGGGTTG 
GAACGAATAA AATTTTAGTT CAGAGCTAGG AGTTCTTGAG AGCTGAGGAC 
TGCACTTCGA TCAAAATTGA ATCTGACACC TTGTGCCGGA ACATTTTTAT 
GAGCTGATCT GAAAGATTAC GCCTTTTGGC C

Gene models with high sequence identity

AT3G23990.1 [+] show detail - heat shock protein 60
E-value: 0; Score: 964.00

InterPro Scan Digest

Program	Description	E-value
PatternScan	Chaperonin Cpn60, conserved site	0
HMMPfam	Chaperonin Cpn60/TCP-1	4.7e-117
HAMAP	Chaperonin Cpn60	37.798
HMMTigr	Chaperonin Cpn60	0
HMMPanther	CHAPERONIN-60KDA, CH60	0
HMMPanther	Chaperonin Cpn60/TCP-1	0
superfamily	Chaperonin Cpn60/TCP-1	1.4e-74
superfamily	GroEL apical domain-like	4.3e-62
superfamily	GroEL-intermediate domain like	3.3e-19
Gene3D	no description	3.2e-83
Gene3D	no description	5.7e-33
FPrintScan	Chaperonin Cpn60	1.7e-71
FPrintScan	Chaperonin Cpn60	1.7e-71
FPrintScan	Chaperonin Cpn60	1.7e-71
FPrintScan	Chaperonin Cpn60	1.7e-71
FPrintScan	Chaperonin Cpn60	1.7e-71

See the detailed result >

AT3G23990.1

Model type: Protein coding
Short Description: heat shock protein 60
Curator Summary: mitochondrial chaperonin HSP. assist in rapid assembly of the oligomeric protein structures in the mitochondria.
Computational Description: heat shock protein 60 (HSP60); FUNCTIONS IN: copper ion binding, ATP binding; INVOLVED IN: response to cadmium ion, response to cyclopentenone, chaperone-mediated protein complex assembly, response to heat, mitochondrion organization; LOCATED IN: cytosol, cytosolic ribosome, mitochondrion, plasma membrane, mitochondrial matrix; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: heat shock protein 60-2 (TAIR:AT2G33210.1); Has 33706 Blast hits to 33652 proteins in 8680 species: Archae - 676; Bacteria - 21745; Metazoa - 1618; Fungi - 1515; Plants - 790; Viruses - 2; Other Eukaryotes - 7360 (source: NCBI BLink).
Link: InterPro Scan - TAIR