K02327

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02327

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02327

Determination of introduced cDNA(s)

  • J013147K19 - Rice Full-length cDNAs - Original: J013147K19

    full reading [+] show sequence

    Nucleotide sequence: J013147K19 - full reading 
    ATTTAGATTC AATGGAAATT CAGAATCATG GTGTCGATTT TGATGCCGCG 
    GAACCCTCTA ACGCCAGGAA TGAGTTGCAA ATGGATAAAA GAGAAGAAAC 
    TTCTGAGGAA GATTTGGATG ACCAAATGGA AGAAACAGAA GATCCTTCTG 
    AGGAAGAATT GGATGATCTC GTGCTTAACA TCGTGACTTG CAAGCCAAAA 
    AGCTCTGTAG CACAATTGAA TAGCGAAAAG CAAGCAGCGG ATAAGGACTC 
    GCGCTTCAGA AAACGTCAAC AATTTGAAGA ATCTTCTCTG CAGAAGAGGC 
    ATAAATCCTC TGATTTCTCT GAAACTAGAA ATAGGAAACA GTCTTTCCCT 
    GCTATATCAG GAGCCATCCA AAATGAACAA AAATCTTCAG ATTTGTCAGG 
    AAAAGGTACA CATGAGTTCT CATCAGAACT CGATGGAGAT AAAAGTTCTG 
    CTAGTGTCCA AGATGTTGAA GCACTAGCAG ATTCTTCTAC CAGAAATGGG 
    AGTGAACAAA ATTCGCTTGC TAGTGAACCT AAAAGAGTTT CCTTGTGGAC 
    TCAGAAATCT GCCTGGAGGG ATCTTGTTGG TGGCATGGGG AGTGCATCTT 
    TCAGTCTATC ACAAATATTG CCAAACACCA ATCCAGCACC ACCAAAAGTT 
    TCAAATGCTA CCGAGGCCTC TGCTTCACAT GCTGAGTCCA GGACGAAAGT 
    GAAACCAAGC GGGAAATCTT TGAAACCCTC GGAAGCTGCA ACTCAGCTCT 
    TGCCTGAGCA GAAGATGCCT ACAAGTTCCA TGGCAATGCT GTCTAGTGAG 
    CGTAAGGAGA ATAATAAGCT GGAAAAGGAG AGGGTGGTTC CAAAGATCAC 
    TATTGGTGAA GTGTGTCCGT TCATGAGAAA TTCAGAGTCA GAAAAGCAAT 
    GGTCAAAGGC AAAGAAGGTT CTGACTGGTT TCATCAAGAA GGGCAATGAG 
    AGCACTGGAT CGAATGTCGG GAAAGGGAAG CCATCAACAA GGAGATAACA 
    ACGTAGCATG TCATTCCAGC TTCATCTTGT TGAACTACAA GCTCGGTAGC 
    ATGTCATTCC AGCTTCATCT TGTTGAACTA CAAGCTCGGT GGTTTCGTGT 
    CTCATAGGAA CATGTGTTAT TTTGTTGATT GGTCTCATAG TCTGCCTGTT 
    AAGAATGATC TGTCTTTGTT TGTGAAGCAC AATGCTATGT ACGAGTTTTG 
    TTCAAATTGT TATTATTCTT TGTACGAGCA ATTTAAAGTC AAACATGTTT 
    C

    Gene models with high sequence identity

    1. AT5G58130.1 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
      E-value: 2e-06; Score: 50.40

     

    InterPro Scan Digest

    See the detailed result >

    AT5G58130.1

    Model type
    Protein coding
    Short Description
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Curator Summary
    Encodes ROS3 (repressor of silencing 3), a RNA-binding protein required for DNA demethylation.
    Computational Description
    REPRESSOR OF SILENCING 3 (ROS3); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); Has 14321 Blast hits to 7664 proteins in 903 species: Archae - 313; Bacteria - 6242; Metazoa - 2615; Fungi - 1429; Plants - 503; Viruses - 131; Other Eukaryotes - 3088 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR