K02404

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02404

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
flower (PO:0009046)
  • abnormal (PATO:0000460)
    (Flower::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Original: K02404

Determination of introduced cDNA(s)

  • J023034H23 - Rice Full-length cDNAs - Original: J023034H23

    full reading [+] show sequence

    Nucleotide sequence: J023034H23 - full reading 
    CTTCTGCAAC TCTCTGCACT GTCCCCGCTT CCTTCCACGG CCACGGCGGC 
    GGCCATCGCC GCCGTCGGCG ATCTCGCCCT GCTCCATCCC GCTCTCCCGT 
    TTCCAATCCC CCAACCGGAG CAGAAATGGC CATCTCCTCC GCCCTCTCCT 
    TCCTCTCCTA TCGCAAGCGC CCTATCGTTG TTTCCGTCTT CCTCTTCCTC 
    CTCCTCTCAT CCCTCTTCCT CCTCTTCAGC CCCGCACCTG CCGCGCTCCC 
    TTTCTTCTCC TTCCCCTCCT CTCACCTCTC CTCCTCCTCC TCCTCTCCTA 
    TCGCCGCCAC GCCGCCACCC CTGACTCCAG TTTCCGTCCC CGCCAACGCA 
    TCTTCACCGG AGACCCCAGT TGACGCGTCC GGTGGGAGCA ACGCTGGCGC 
    CACCGCACCC ACCAGGGACG CTCCTCAGCC AGATCGCAGT CGGAGCACGC 
    CCCCTGCCGC CGTCGGAGTG CGTGGATCGG CGGGCACCAA CGGAACCAGC 
    AGGGGCGTCT CGGCCGGCGG CGATGGAGCA GGAGCAGCAG CGGCGGCGGC 
    GGCAGGTGTG GCGGTGCCGT CGTGGGAGGT GTGCGAGGTG GGGAAGGGAG 
    TGGTGGCCGC GGACTACATA CCGTGCCTGG ACAACGTGAA GGCGGTGAAG 
    GCGTTGAAGT CGCTGCGTCA CATGGAGCAC CGGGAGCGCC ACTGCCCGAC 
    GGCGCCGAGG CCGAGGTGCC TCGTGCCGCT GCCCACGGGG TACCGGTCAC 
    CCTTGCCGTG GCCGCGCAGC CGTGACATGA TTTGGTACAA TAATGTCCCT 
    CATCCAAAGT TAGTGGAATA CAAGAAGGAC CAGAACTGGG TTAGGAAGTC 
    TGGCAATTAT TTTGTTTTCC CTGGAGGTGG AACTCAATTT AAAGCTGGTG 
    TGACTAAATA CATTCGATTT ATTCAACAGA TCATGCCAAA CATTGAATGG 
    GGGACCCATA CAAGAACTGT TCTGGATGTT GGATGCGGTG TTGCCAGCTT 
    TGGTGGATAC TTGCTTGACA GGAATGTCAT TACTATGTCT GTTGCACCCA 
    AAGATGAGCA TGAAGCTCAG ATACAGTTTG CTCTCGAACG TGGAATTCCA 
    GCATTGTTGG CAGTGATTGG AACACAAAAA CTTCCATTCC CTGATAATTC 
    ATTTGATGTG ATCCATTGTG CAAGGTGTAG GGTCCACTGG TATGCTGATG 
    GTGGAAAACC ATTATTAGAG CTTAATAGAG TGCTCAGGCC TGGAGGATAC 
    TACATCTGGT CTGCAACTCC TGTATATCGT CGTGGCAAAA GAGATGAAGA 
    CGACTGGAAT GCGATGGTTA CTCTGACCAA GTCAATTTGC TGGAGGACAG 
    TAGTAAAATC TAAGGATGTT AATAGGATTG GTGTTGTTAT ATATCAGAAG 
    CCAACCTCAA ATTCTTGCTA CTTTGAGAGA AAACAGAATG AACCACCCCT 
    ATGCCCTAGT AGGGAAGGAT CACATTCCCC TTGGTATGCA CCACTTGATA 
    GTTGCCTCTT GTTACCTGCT GTGTCAAGTT CAGGTGAAGG AAACAGCTGG 
    CCCATTTCCT GGCCAGAAAG GCTTAACATC AAATACTCAA CTATATCTGA 
    CAACGCTTCT ACTCAGTTTT CTCAAGAAAA ATTTGATTCT GACACAAAGC 
    ACTGGAAGGA CCTTGTTTCA GAAGTATATT TCAATGAGTT TGCAGTTAAT 
    TGGTCTACCG TTCGCAATGT CATGGATATG AATGCTGGTT TTGGAGGATT 
    TGCGGCGTCA CTCATCCACA AACCTTTGTG GGTTATGAAC GTTGTACCTT 
    TTGATCATCC AGAAGCCTTG CCTATCATTT TCAACAGAGG TTTGATTGGG 
    GTATATCATG ACTGGTGTGA ATCTTTTAAT ACATATCCCC GGACCTATGA 
    TCTTGTTCAC ATGAGTTATC TCCTTCAGGG CCTCACAAAT AGGTGTGATA 
    TCATTGAAGT AGCAGCAGAA ATTGATAGGA TACTTAGACC TGGAAAATGG 
    TTCGTGTTGC AAGATACTGA GCAAGTGATT AGAAAAATGG ATCCAGTTCT 
    TCGCTCTTTG CACTACAGGA CTGCAATTGT GAAGCAACAA TTTCTTGTCG 
    CTACAAAGGG CTTCTGGCGC CCATACAGTG CAGGTTCTGA GTCAAGATGA 
    TTCATGCTTC GTCTTCTGTT GCTGTTAGTA AAAATCAAAC AACTGATTTG 
    ATTCTTTAAA TTCTAATTAC ATGGATTCTT CGCATAGCAT AGATGACACA 
    AATTAGCCCC ATATCAACGG TGAGTTCATT CCCTCTGTTT GTAGTTAGCA 
    GTCCATATTA ACCATCGGGC TTACTGAGTT GATTCTTTTG TTTCCGTTTT 
    GTTGTGTACA AATTAAAGAA CTTATGGCTA CAGCAATAGC CAATAGGTTA 
    GCAATAACAG ATTGTGGATT TTGAAAGCAT GTCTTGATTA TTCATTGGT

    Gene models with high sequence identity

    1. AT2G40280.1 [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
      E-value: 0; Score: 712.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF248, methyltransferase putative 1e-202
    HMMPanther METHLYTRANSFERASE, UBIE/COQ5 FAMILY 4.1e-07
    HMMPanther METHYLTRANSFERASE 4.1e-07
    superfamily S-adenosyl-L-methionine-dependent methyltrans 2.4e-32
    superfamily S-adenosyl-L-methionine-dependent methyltrans 8.5e-15
    Gene3D no description 1.3e-13

    See the detailed result >

    AT2G40280.1

    Model type
    Protein coding
    Short Description
    S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
    Computational Description
    S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT3G56080.1); Has 1258 Blast hits to 1230 proteins in 178 species: Archae - 2; Bacteria - 211; Metazoa - 31; Fungi - 46; Plants - 944; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

  • J033118J24 - Rice Full-length cDNAs - Original: J033118J24

    full reading [+] show sequence

    Nucleotide sequence: J033118J24 - full reading 
    TTTTTTGCCG ACTTCTCCTC CCCCAACCTC TCCGGCGACG CATCGAACCC 
    CAAAATTCTT CCTCTCTCGA GAGAGAGCTA GGTTAGGATC GGATCAATCT 
    CTCGCTTCCT TCCCGTGAAG ATGTCGTCGC CCGCGGGGGA GGATGAGAAG 
    AAGCCGGCGG GGGGAGAGGG CGGCGGCGCC CACATCAACC TCAAGGTCAA 
    GGGACAGGAT GGCAACGAGG TGTTCTTTCG TATCAAGAGA TCAACCCAAC 
    TGAAGAAGCT GATGAACGCC TACTGTGATC GCCAGTCCGT GGATATCAAA 
    TCTATTGCCT TCCTGTTTGA TGGTCGTAGG CTCAATGCTG AGCAGACCCC 
    TGACCAGCTC GAGATGGAAG ACGGCGACGA GATTGACGCC ATGCTTCACC 
    AGACTGGGGG CTCTCTGCCT GCCTAGAGCT CATATGAAGC TGTTGCAACA 
    ATGCAACCGC ATTACTATTT TCTGCCTTGT TAGAGTCAGT CAGTCTAGAG 
    GACATGAAAC TAGTCTAAAG AACTTGTGAA TCGTTTGGTC CTGTGCCCCA 
    GCTGAAGGAC ATTAGGGTGG CTTTGTTTAG CGAGACTTGG TACTTTGGTG 
    TGTTAATCCA TCGCCTAATT TATCCT

    Gene models with high sequence identity

    1. AT4G26840.1 [+] show detail - small ubiquitin-like modifier 1
      E-value: 2e-37; Score: 152.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Ubiquitin 2.2e-13
    superfamily Ubiquitin-like 1.4e-23
    HMMPfam Rad60-SLD 1.5e-25
    Gene3D no description 1.2e-31
    ProfileScan Ubiquitin supergroup 15.231
    HMMPanther UBIQUITIN-LIKE PROTEIN SUMO/SMT3-RELATED 7.3e-48

    See the detailed result >

    AT4G26840.1

    Model type
    Protein coding
    Short Description
    small ubiquitin-like modifier 1
    Curator Summary
    Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets.
    Computational Description
    small ubiquitin-like modifier 1 (SUMO1); CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: small ubiquitin-like modifier 2 (TAIR:AT5G55160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR