K02404

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02404

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
flower (PO:0009046)
  • abnormal (PATO:0000460)
    (Flower::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Original: K02404

Determination of introduced cDNA(s)

  • J023034H23 - Rice Full-length cDNAs - Original: J023034H23

    full reading [+] show sequence

    Nucleotide sequence: J023034H23 - full reading
    CTTCTGCAAC TCTCTGCACT GTCCCCGCTT CCTTCCACGG CCACGGCGGC 
    GGCCATCGCC GCCGTCGGCG ATCTCGCCCT GCTCCATCCC GCTCTCCCGT
    TTCCAATCCC CCAACCGGAG CAGAAATGGC CATCTCCTCC GCCCTCTCCT
    TCCTCTCCTA TCGCAAGCGC CCTATCGTTG TTTCCGTCTT CCTCTTCCTC
    CTCCTCTCAT CCCTCTTCCT CCTCTTCAGC CCCGCACCTG CCGCGCTCCC
    TTTCTTCTCC TTCCCCTCCT CTCACCTCTC CTCCTCCTCC TCCTCTCCTA
    TCGCCGCCAC GCCGCCACCC CTGACTCCAG TTTCCGTCCC CGCCAACGCA
    TCTTCACCGG AGACCCCAGT TGACGCGTCC GGTGGGAGCA ACGCTGGCGC
    CACCGCACCC ACCAGGGACG CTCCTCAGCC AGATCGCAGT CGGAGCACGC
    CCCCTGCCGC CGTCGGAGTG CGTGGATCGG CGGGCACCAA CGGAACCAGC
    AGGGGCGTCT CGGCCGGCGG CGATGGAGCA GGAGCAGCAG CGGCGGCGGC
    GGCAGGTGTG GCGGTGCCGT CGTGGGAGGT GTGCGAGGTG GGGAAGGGAG
    TGGTGGCCGC GGACTACATA CCGTGCCTGG ACAACGTGAA GGCGGTGAAG
    GCGTTGAAGT CGCTGCGTCA CATGGAGCAC CGGGAGCGCC ACTGCCCGAC
    GGCGCCGAGG CCGAGGTGCC TCGTGCCGCT GCCCACGGGG TACCGGTCAC
    CCTTGCCGTG GCCGCGCAGC CGTGACATGA TTTGGTACAA TAATGTCCCT
    CATCCAAAGT TAGTGGAATA CAAGAAGGAC CAGAACTGGG TTAGGAAGTC
    TGGCAATTAT TTTGTTTTCC CTGGAGGTGG AACTCAATTT AAAGCTGGTG
    TGACTAAATA CATTCGATTT ATTCAACAGA TCATGCCAAA CATTGAATGG
    GGGACCCATA CAAGAACTGT TCTGGATGTT GGATGCGGTG TTGCCAGCTT
    TGGTGGATAC TTGCTTGACA GGAATGTCAT TACTATGTCT GTTGCACCCA
    AAGATGAGCA TGAAGCTCAG ATACAGTTTG CTCTCGAACG TGGAATTCCA
    GCATTGTTGG CAGTGATTGG AACACAAAAA CTTCCATTCC CTGATAATTC
    ATTTGATGTG ATCCATTGTG CAAGGTGTAG GGTCCACTGG TATGCTGATG
    GTGGAAAACC ATTATTAGAG CTTAATAGAG TGCTCAGGCC TGGAGGATAC
    TACATCTGGT CTGCAACTCC TGTATATCGT CGTGGCAAAA GAGATGAAGA
    CGACTGGAAT GCGATGGTTA CTCTGACCAA GTCAATTTGC TGGAGGACAG
    TAGTAAAATC TAAGGATGTT AATAGGATTG GTGTTGTTAT ATATCAGAAG
    CCAACCTCAA ATTCTTGCTA CTTTGAGAGA AAACAGAATG AACCACCCCT
    ATGCCCTAGT AGGGAAGGAT CACATTCCCC TTGGTATGCA CCACTTGATA
    GTTGCCTCTT GTTACCTGCT GTGTCAAGTT CAGGTGAAGG AAACAGCTGG
    CCCATTTCCT GGCCAGAAAG GCTTAACATC AAATACTCAA CTATATCTGA
    CAACGCTTCT ACTCAGTTTT CTCAAGAAAA ATTTGATTCT GACACAAAGC
    ACTGGAAGGA CCTTGTTTCA GAAGTATATT TCAATGAGTT TGCAGTTAAT
    TGGTCTACCG TTCGCAATGT CATGGATATG AATGCTGGTT TTGGAGGATT
    TGCGGCGTCA CTCATCCACA AACCTTTGTG GGTTATGAAC GTTGTACCTT
    TTGATCATCC AGAAGCCTTG CCTATCATTT TCAACAGAGG TTTGATTGGG
    GTATATCATG ACTGGTGTGA ATCTTTTAAT ACATATCCCC GGACCTATGA
    TCTTGTTCAC ATGAGTTATC TCCTTCAGGG CCTCACAAAT AGGTGTGATA
    TCATTGAAGT AGCAGCAGAA ATTGATAGGA TACTTAGACC TGGAAAATGG
    TTCGTGTTGC AAGATACTGA GCAAGTGATT AGAAAAATGG ATCCAGTTCT
    TCGCTCTTTG CACTACAGGA CTGCAATTGT GAAGCAACAA TTTCTTGTCG
    CTACAAAGGG CTTCTGGCGC CCATACAGTG CAGGTTCTGA GTCAAGATGA
    TTCATGCTTC GTCTTCTGTT GCTGTTAGTA AAAATCAAAC AACTGATTTG
    ATTCTTTAAA TTCTAATTAC ATGGATTCTT CGCATAGCAT AGATGACACA
    AATTAGCCCC ATATCAACGG TGAGTTCATT CCCTCTGTTT GTAGTTAGCA
    GTCCATATTA ACCATCGGGC TTACTGAGTT GATTCTTTTG TTTCCGTTTT
    GTTGTGTACA AATTAAAGAA CTTATGGCTA CAGCAATAGC CAATAGGTTA
    GCAATAACAG ATTGTGGATT TTGAAAGCAT GTCTTGATTA TTCATTGGT

    Gene models with high sequence identity

    1. AT2G40280.1 [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
      E-value: 0; Score: 712.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF248, methyltransferase putative 1e-202
    HMMPanther METHLYTRANSFERASE, UBIE/COQ5 FAMILY 4.1e-07
    HMMPanther METHYLTRANSFERASE 4.1e-07
    superfamily S-adenosyl-L-methionine-dependent methyltrans 2.4e-32
    superfamily S-adenosyl-L-methionine-dependent methyltrans 8.5e-15
    Gene3D no description 1.3e-13

    See the detailed result >

    AT2G40280.1

    Model type
    Protein coding
    Short Description
    S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
    Computational Description
    S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT3G56080.1); Has 1258 Blast hits to 1230 proteins in 178 species: Archae - 2; Bacteria - 211; Metazoa - 31; Fungi - 46; Plants - 944; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR
  • J033118J24 - Rice Full-length cDNAs - Original: J033118J24

    full reading [+] show sequence

    Nucleotide sequence: J033118J24 - full reading
    TTTTTTGCCG ACTTCTCCTC CCCCAACCTC TCCGGCGACG CATCGAACCC 
    CAAAATTCTT CCTCTCTCGA GAGAGAGCTA GGTTAGGATC GGATCAATCT
    CTCGCTTCCT TCCCGTGAAG ATGTCGTCGC CCGCGGGGGA GGATGAGAAG
    AAGCCGGCGG GGGGAGAGGG CGGCGGCGCC CACATCAACC TCAAGGTCAA
    GGGACAGGAT GGCAACGAGG TGTTCTTTCG TATCAAGAGA TCAACCCAAC
    TGAAGAAGCT GATGAACGCC TACTGTGATC GCCAGTCCGT GGATATCAAA
    TCTATTGCCT TCCTGTTTGA TGGTCGTAGG CTCAATGCTG AGCAGACCCC
    TGACCAGCTC GAGATGGAAG ACGGCGACGA GATTGACGCC ATGCTTCACC
    AGACTGGGGG CTCTCTGCCT GCCTAGAGCT CATATGAAGC TGTTGCAACA
    ATGCAACCGC ATTACTATTT TCTGCCTTGT TAGAGTCAGT CAGTCTAGAG
    GACATGAAAC TAGTCTAAAG AACTTGTGAA TCGTTTGGTC CTGTGCCCCA
    GCTGAAGGAC ATTAGGGTGG CTTTGTTTAG CGAGACTTGG TACTTTGGTG
    TGTTAATCCA TCGCCTAATT TATCCT

    Gene models with high sequence identity

    1. AT4G26840.1 [+] show detail - small ubiquitin-like modifier 1
      E-value: 2e-37; Score: 152.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Ubiquitin 2.2e-13
    superfamily Ubiquitin-like 1.4e-23
    HMMPfam Rad60-SLD 1.5e-25
    Gene3D no description 1.2e-31
    ProfileScan Ubiquitin supergroup 15.231
    HMMPanther UBIQUITIN-LIKE PROTEIN SUMO/SMT3-RELATED 7.3e-48

    See the detailed result >

    AT4G26840.1

    Model type
    Protein coding
    Short Description
    small ubiquitin-like modifier 1
    Curator Summary
    Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets.
    Computational Description
    small ubiquitin-like modifier 1 (SUMO1); CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: small ubiquitin-like modifier 2 (TAIR:AT5G55160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR