K02410

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02410

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02410

Determination of introduced cDNA(s)

  • J033086N17 - Rice Full-length cDNAs - Original: J033086N17

    full reading [+] show sequence

    Nucleotide sequence: J033086N17 - full reading
    GCTTCCTTCT TCTTCCACGC CCCGCATCGC CGCCGCCGCC GGAGAGGGAG 
    AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG CGAGAGATGA AGACGATCTT
    GGCTTCGGAG ACGATGGAGA TCCCGTCGGG GGTGACGGTG CACGTGGCGG
    CGAAGGTGGT GACGGTGGAG GGTCCCCGTG GGAAGCTGAC GCGCAACTTC
    AAGCACCTGA ACCTGGACTT CCAGCTGCTG GAGGTGGAGG GGGTGAGGAA
    GCTGCAGGTG GACGCGTGGT TCGGCACCCG CCGCACCATG GCCGCCATCC
    GCACCGCCAT CTCCCACGTC CAGAACCTCA TCACCGGCGT CACCAAGGGC
    TACCGCTACA AGATGCGCTT CGTCTATGCC CATTTCCCCA TCAACGCCTC
    CATCACCAAC TCCAACACCG CCATCGAGAT CAGGAACTTC CTCGGCGAGA
    AGAAGGTGAG GAAAGTGGAC ATGCTTGAGG GTGTGACAAT TTTGCGTTCT
    GAGAAGGTCA AGGATGAGCT GGTCCTTGAT GGCAATGATA TCGAGCTTGT
    CTCCCGTTCT GCGGCACTGA TCAACCAGAA ATGCCACGTC AAGAACAAGG
    ATATCAGGAA GTTCCTGGAT GGCATCTATG TCAGTGACAA GGGCACCATC
    ACTGAGGACC AGTGAGCTGC GTTTCCTTAC TAGCTGTAGC AAAACCTGTC
    CTAGAGAGAG TGCACAAGGA ACTTTTACTG CTCTGTTTTT GAGTCAAATT
    ACAAGGTCAT TCGGCAATGA AATTTTGTAC TACTGGGTTA GGATGTTATT
    ATGTAATTGG AGCATGTGCT CCTATGGTAT CCGTATTGTT TGTGAGAATG
    TTTCTGTGCT TATTTCTCTT GATGGATCTT TTTTACACCG TTGAAAGAAC
    CTGCAACTTG GGTT

    Gene models with high sequence identity

    1. AT1G33140.1 [+] show detail - Ribosomal protein L6 family
      E-value: 2e-75; Score: 279.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Ribosomal protein L6, alpha-beta domain 2.2e-29
    superfamily Ribosomal protein L6, alpha-beta domain 1.9e-17
    HMMPfam Ribosomal protein L6, alpha-beta domain 0.0000000000049
    HMMPfam Ribosomal protein L6, alpha-beta domain 0.000000000000035
    Gene3D Ribosomal protein L6, alpha-beta domain 6.3e-17
    Gene3D Ribosomal protein L6, alpha-beta domain 4.9e-36
    PatternScan Ribosomal protein L6, conserved site-2 0
    HMMPanther 60S RIBOSOMAL PROTEIN L9 5.4e-126
    HMMPanther Ribosomal protein L6 5.4e-126

    See the detailed result >

    AT1G33140.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L6 family
    Curator Summary
    Encodes ribosomal protein L9. Identified in a screen for enhancers of as1. as1/pgy double mutants show defects in leaf vascular patterning and adaxial cell fate. Double mutant analysis indicates pgy genes function in the same pathway as REV, KAN1 and KAN2.
    Computational Description
    PIGGYBACK2 (PGY2); FUNCTIONS IN: structural constituent of ribosome, rRNA binding; INVOLVED IN: adaxial/abaxial pattern formation, translation; LOCATED IN: cytosolic large ribosomal subunit, vacuole, large ribosomal subunit, membrane, chloroplast envelope; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein L6 (InterPro:IPR000702), Ribosomal protein L6, alpha-beta domain (InterPro:IPR020040), Ribosomal protein L6, conserved site-2 (InterPro:IPR002359); BEST Arabidopsis thaliana protein match is: Ribosomal protein L6 family (TAIR:AT1G33120.1); Has 1644 Blast hits to 1643 proteins in 495 species: Archae - 312; Bacteria - 169; Metazoa - 422; Fungi - 179; Plants - 339; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR