K02434

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02434

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02434

Determination of introduced cDNA(s)

  • J033132N07 - Rice Full-length cDNAs - Original: J033132N07

    full reading [+] show sequence

    Nucleotide sequence: J033132N07 - full reading 
    GGGCGGGCGG CTGAGGCTTT TTGTTCCTCC TCCTGTGAGA AGAGAGGAAG 
    AGGCGGATCG GATTGGGATT GGGGATCCAT CCATCGATCG ATTTTGCCTT 
    GCCAGTTTTC ATCCGGCTCC GATTCCGCCT CTCATCCTCC TTCCTTCCCT 
    TGATTCCTCT CCTCTCCTCT CCCCTCTGAG TCGGGTCGGG GTCGGGGGGA 
    GTAGGGTTTC TCTTTCGACT TGGCGGCGGC GACTCAGGTC GGCACCTACT 
    TCCTTCGCAA CTACTACAAC CTCCTGCAGC AGAGCCCCGA TGTCGTCCAC 
    CAGTTCTACA ACGACGCCAG CACCATGGTC CGCGTCGACG ACCTCGCTGG 
    AACCAACACC ACCGCCAGCA CCATGATGGA TATACACTCC CTCATTATGT 
    CCTTGAATTT CACCCAAATC GAGATCAAAA CAGCCAACTT TCTCAACTCA 
    TGGGGTGATG GTGTGCTAGT TATGGTATCT GGTCTTGTAC AGACCAAGGA 
    GTACAGCCAC CAAAGGAAAT TCATCCAGAT GTTTTTCCTT GCTCCCCAGG 
    AAAAGGGTTA CTTTGTTCTC AATGATTATT TCCATTTCGT TGACGAAGAG 
    CAAGTGCAAC CTGCACCTGT TATTGCCCAG GACAACTTCG AGACCAACAT 
    GGCATCCAAC TCCGTCGTCG AACCTGAGTA CATTCACGAA GAGGAAAATC 
    AAAGTGCTGT CCCAATAACA TCTGAAGAAA GTGATGCTGT TGAGAACTAT 
    ACTTACTCTG AGCCACCACA GCAAGTAGTT TCTCAGTCAG ACAATTGGGG 
    AGATGAGCCT CTTCCTGAAG AACCAATTTC TTCCTTTACA AATGGAATGG 
    CGATGGCACC GGAGGAGCCA GTGCAATCTC CACCTGTTCC ACCTCCTCAT 
    GTAGAGGAAC CTGTTGGTGA ACCAGTAAAG AAGACCTATG CCTCCATTCT 
    AAGAACCGCA AAAGCTCCAC TGGTGTTCCC TGTAGCCCAG CCAGCCCCGA 
    CTAGACCTCA CCAGGCAACC GAGACAAACC AGGCTGCACA GCATTCGGTT 
    ATGACTTCGT CTGTGGCAAC CGAGAAGCCA AAAACCGATG TTTATGGTGA 
    ATTTGCTGTC CAGGATGATG AAGAGAGCAA ATCTGTCTAT GTTGGGAACG 
    TGCCATCTTC TGTATCTGAG GCTGATCTTG AGAATGAGTT CAAGAAGTTT 
    GGGCGGCTCA TTCCTGATGG TGTTGCTATC AGAAGCCGCA AGGAGACCGG 
    AGGCTACTAT GCGTTCGTGG AATTCGAAGA ACTTAGTGGT GTTCACAATG 
    CATTGAAGGC TTCACCAATT GAAATAAATG GGCGGCAGAT ATATGTTGAG 
    GAGCGGAAGC CTAACAGCGG CATAAGAGGT GGAAGAAGGG GAGGCAGAGG 
    TCGTTTCGGT GGAGGAGGGC GAGGGTATGC TAGAGGGGGA GGCGACAACG 
    AATATGCGGG CAACCGTGGT AGTGGCAGGC CATCAAATGG CTACCAGCGT 
    GTTCCTCACC ATGAGAGGGG CATTTTGGGG AGCCACAACG CAAGAAACTA 
    AATGGTTCAC CACCCCATGG TGGTGGCCTG GTGGGATATG CATATGCTGC 
    AAGCATGAGG TTTTGATCCG TCAAAAGGGA GGGAGAGCTG CATAACTAAG 
    AACTACTGGG TTGTTTCCTC CGTTCCGTTA GGTTGCTTTT TTTTTTTGGT 
    TTTGGGTTTT GTCGCAGCAG CAGTTTGTTG ACGAAGAATG TGTGGTATCC 
    AACTTTGGCT AGACGTTTTA TTATGATGCA AATGCCCGTC CTTGATGTGC

    Gene models with high sequence identity

    1. AT5G43960.1 [+] show detail - Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain
      E-value: 1e-69; Score: 261.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 6.7e-24
    Gene3D Nucleotide-binding, alpha-beta plait 5.6e-16
    ProfileScan RNA recognition motif, RNP-1 13.26
    ProfileScan Nuclear transport factor 2, Eukaryote 25.403
    superfamily NTF2-like 4.5e-34
    superfamily RNA-binding domain, RBD 4.3e-18
    HMMPanther RNA-BINDING RAS-GAP SH3 BINDING PROTEIN RELAT 1.4e-55
    HMMPfam Nuclear transport factor 2 1.5e-23
    HMMPfam RNA recognition motif, RNP-1 5.1e-09
    HMMSmart RNA recognition motif, RNP-1 4e-12

    See the detailed result >

    AT5G43960.1

    Model type
    Protein coding
    Short Description
    Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain
    Computational Description
    Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: transport, nucleocytoplasmic transport; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (TAIR:AT3G25150.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR