K02437

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02437

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02437

Determination of introduced cDNA(s)

  • J023001G05 - Rice Full-length cDNAs - Original: J023001G05

    full reading [+] show sequence

    Nucleotide sequence: J023001G05 - full reading 
    GATCCGTCCC GTCTCCTCGC CCGCCGCCCT CGACTCGCGT CTCCTCGCCT 
    GCCCTGCCGC TGGCATCCTG CTAGCAGAGG TGGCGCTGGC GTTCTCCTGC 
    TCCCGCCGCA TTCGCTCACC GGTGAGCATC CTAATCCATC CCATCCGGCC 
    TCGGCCTCGA GTTTCGTCTC CTCGCCTGCC GCTTGCGCCG ATCCCCATCC 
    TGCGAGGAGA GGTGGCGCCC GGCGTCCTCC TGCTTCCACC GCATCGTCGC 
    TCGCCGGCCA AACTGAAGCC TCTCCTCTCA AGGGCCAACC TCCTGATCGC 
    TAGGGACATA GAATGGGCAA ATATCATGTT GGCTTTTGAG CAGGAGAGTA 
    GATATATCAT AATGGATCCG CTCTTTCCTC AATCACCTGT TGGTTTCATT 
    CGAGAGAAAG GCAATGTCAT ATTTAGGCAG CTATTTCGCT CAAGAAGGCC 
    ATTTGTTGCA GAAATTACTG ATGCTATGGG CAATGAGATC TTTACGGTTA 
    GACGGCCATT TTGGCTTATC AACAGTTCCA TTTATGCAGA AGTGAATGGC 
    AAGGAGGTAG GTGTAGTCCA CAGACGTTGG CATCTCTGGC GTAGAATTTA 
    TGACCTGTAC TTAGGGAATA GGCAATTTGC TGTGGTCGAG AATCCTGGAT 
    TTTGGAACTG GACCTTTACT CTCACAGATG AGGATGACAA TGTACTAGCC 
    CAGATTGATC GTAATTGGAG GGGAATCGGT TTTGAACTCT TCACAGATGC 
    TGGCCAGTAT GCAATTCGAT TTGGTGATGC AGGACTAAAC CGTAAATTTG 
    GTCTCGCTTC AGATATCGAT GAACTGCATG TTGTTCGCCA GTTGACTTTA 
    CCTGAAAGGG CTGTTGCACT AGCTCTTGCG GTGTCTCTGG ATTGTGATTA 
    TTTTTCTAGG AGAGGTGGCT GGTAAGTGCC GTGTGAACTT AACCTGTGGA 
    GACGGTTCCT CTGTAAATTT TGGTTTAACT ACTGTTATTG GGAAACTGAT 
    TGAAATGCCT ACCTACTGTT GTGAAACTGA TTCAAATGCC TTTTTTCTTT 
    CAGGGGACTT CCTTTCCCT

    Gene models with high sequence identity

    1. AT2G04940.1 [+] show detail - scramblase-related
      E-value: 6e-94; Score: 341.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther UNCHARACTERIZED 2.6e-126
    HMMPanther Scramblase 2.6e-126
    HMMPfam Scramblase 1.1e-59

    See the detailed result >

    AT2G04940.1

    Model type
    Protein coding
    Short Description
    scramblase-related
    Computational Description
    scramblase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Scramblase (InterPro:IPR005552); Has 427 Blast hits to 416 proteins in 142 species: Archae - 0; Bacteria - 29; Metazoa - 228; Fungi - 113; Plants - 38; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR