K02442

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02442

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Original: K02442

Determination of introduced cDNA(s)

  • J023030M12 - Rice Full-length cDNAs - Original: J023030M12

    full reading [+] show sequence

    Nucleotide sequence: J023030M12 - full reading 
    GAATGTGGTG CAAGCGGTTA GATCAACGAT GGACGATCCC GATTAGCCCG 
    CCTCGCGGTT CATCCGGAGA ATCCCAATAT TCTGACCGCC ACCGTGTCCC 
    TCTACCCGCC GTCACCCCTG GGCTTCGCCG CCGGCGAGCG AACCCCGCCG 
    CTCCCCTTCC GAATCCCGGG CCGACATTGC AAGCCGGTGG GCATCGCCAG 
    TTCGCCACCG CCATCTGGCT TCTGCCCTGA CCCTCCCGCT CGGATCAGCG 
    CGTGTTACCG CGGCGCCGGA TGAACCGCGG ACGCCGCCTG CCTGCTCGAC 
    GGAATGCCTG AGTGGAGTGA GGCACGCTGG CGCATGTTCC AAATAATAGA 
    TGCCAACTGT GAGTTGAGGT TCAATGCATA GGTCACCGCA AGTCCAGCAA 
    TGCCTGCATG TACAATATAT AAGTTTGAAA ACAGCCAACA TAGAGTGACT 
    TAATGCTTCC ATAATCACCA AGAGCCTAAG TTCTTCTTAG AGCTTACTTG 
    GATTTATAAA ACCTTCAGGA AGGCTCACTA GCAGGGTCAA AGAGAAAGCA 
    AAGACAAAGT TGGATAACAT GTTTAGCCTG AAAGAAAGCC ATTCCATTGA 
    AGAAATGTTA TGGAACCATG GCCGGGAGTG ATTGTCGACA AGTCCAAGGA 
    TGGGAGCCCT TTGGATTTGT GATAAGCGAG CCAATTCTCT TGCTGTTGGT 
    ATGTAGTATC GCTGCACATT ACACAGAGTA TATGGTTTCA GTATTTTGTG 
    AATGAACGCT ATAATTTATG GAGAAAAGGT GTACCTATAG CTTCTTGGAA 
    CTCATCGTGG TGCACAGAGT GACTTTTGCA CATGGTGCTA TGGTAGTACA 
    AAAGGCTAGT AATAAAGTTT TTTTTTCTTG TTGGGAGTTC ATACCTGACA 
    CATGAAACAG ACCACCGTTA CTGGAACGAA GATGGCAAAA ACTGGCCAGG 
    CAACCTGGGA CATAACACCA ATGGTCCCCA GAATTTGTAT GACTGAAAAT 
    ACGCACCAAC CAAGCTTGTT TGCTATTTCC AGATCTAGAA CACTTTGGTC 
    ATTGGAGGCC TGTTAAAGCA TAAATACACA CCTATTAGTT TAGGGGTGGA 
    GAGAGTACGT GATGCAGTAT AAAATGGTTT ACAAACTAAG TCAGTCTTAA 
    CCCTGTTCAG AATTCTTCCA GTAGGCGTGG AGTCAAAGAA GGACATTGGG 
    GCTCGCATGA TGCAGTGGAG CATGTTCTTG AAGAACTTTT CTGATGTTAG 
    TAGCCCAATT AGTGAAACAA GCATGGACCG AGCAAAGACA CACAAGGCAC 
    TTCCAATTGA CAATGCTATG TATACGGCAA ACATGAGCCC TAATCCGACA 
    GTTGGCCTGG TTGCTGATGT TGGAGGAGAT GCCCATGCCA TCCAATAGTT 
    GCTTGCTACC TGAAATATTT GGAAGAAGGA CTGTGCTGCG ATTGTGACTG 
    GCACTAAGGC ACCTCCATAA ACTGCCCTCA GGATAGGCGG AGTCCCTTTT 
    GATAGATATG TGATATCAAA GCCGCCCGCA GCCGCATCCC GAGCTGTCGA 
    GCCCCGAAAA TCCATTGTCT CTGAGCAACT GTTTCCACAA CTTTGGCACT 
    GAGAAAAGCA ACAGCCAGAA GAAACTGAAC CAAGATACTC ATGATGAATA 
    TCAGGTGTAT CAGTGCAAAA GCGTCCATCC AGAAGCAAGA GGCAGGAAAA 
    AAGAACAAGA AGGGAAAAAG GAGAAACAAA GATAATAGCA GAGAAAACCC 
    ATGCAGTGCA ATCAAACTCA TGGATGTTTC GGCGGGGAGG AATCAGACGT 
    ATGCATGAAC CAATCTCTGC ATGCAGATGC AGGGTATGAT TAAACCTTAC 
    TTGATGAATC ACGGAGCAAT CCCCAGCGGA GAAACGCCTG CTGCGCCGTC 
    TCGGGAATCC TCGCGAGAAC ATGCAAGTGC AGGCTCGCTC CTTCCATGGC 
    GCAATGCGAA TGAGACAGGG GAGGAGGAGA GAGGGAGGGA GAGATGGGCA 
    GTGGCCGTGA ACTGGTGACG GTGATATAGA AGGTGGGGAG GCCTGAGTCC 
    GCGCTAGATG GTTACGGGTT TTGGCGTATC ACGGTACACG GTGACAGAGA 
    TCCAAAAATA CGGTTTTCAC CCCGGTAAGG CCTGGTTCAG TTAATCCCTA 
    CGAGATAGGG ATTGGAGGGG ATTTATTCCA CACCTATTGT GATGTGGAAT 
    TATTCTCTCT CAATCCCCTC TAATCCTCTT TAATCCCCAC ACCACCGTAG 
    AATAGGGGCT CGTTCGATGG GAAATTGAAG TGATATGCAT CATATAGTGC 
    ATATTTGGGT CTACATTAAC TATTTTTCTA CGATTATAAT GTAACATGAA 
    AGTGCATATG CACACATTAC TGATCG

    Gene models with high sequence identity

    1. AT3G60160.1 [+] show detail - multidrug resistance-associated protein 9
      E-value: 3e-70; Score: 35.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 2, 6 6.7e-22
    HMMPanther ATP-BINDING CASSETTE TRANSPORTER 6.7e-22
    HMMPanther MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 2, 6 2.5e-16
    HMMPanther ATP-BINDING CASSETTE TRANSPORTER 2.5e-16
    HMMPanther MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 2, 6 6.9e-30
    HMMPanther ATP-BINDING CASSETTE TRANSPORTER 6.9e-30
    HMMPanther MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 2, 6 3.1e-51
    HMMPanther ATP-BINDING CASSETTE TRANSPORTER 3.1e-51
    superfamily ABC transporter, transmembrane domain, type 1 0.00000000000038
    ProfileScan ABC transporter integral membrane type 1 14.934
    HMMPfam ABC transporter, transmembrane domain 0.00000000006

    See the detailed result >

    AT3G60160.1

    Model type
    Protein coding
    Short Description
    multidrug resistance-associated protein 9
    Curator Summary
    member of MRP subfamily
    Computational Description
    multidrug resistance-associated protein 9 (MRP9); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: response to nematode; LOCATED IN: integral to membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: multidrug resistance-associated protein 15 (TAIR:AT3G60970.1); Has 679468 Blast hits to 355652 proteins in 3947 species: Archae - 12543; Bacteria - 548953; Metazoa - 12500; Fungi - 7906; Plants - 6622; Viruses - 19; Other Eukaryotes - 90925 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR