K02524

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02524

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02524

Determination of introduced cDNA(s)

  • J013023F21 - Rice Full-length cDNAs - Original: J013023F21

    full reading [+] show sequence

    Nucleotide sequence: J013023F21 - full reading 
    GAGCTCTTGG TGTGGAGGGG GCACTTCCTG GAGCTTCTGG GGATCGGCGA 
    CGCTGGGCTG CCGCGCGCCA GGGAGGTGCT CTGGCGCCGG ATTGCGCCCC 
    TCGGCGTTGA CAGGGAGTGT GTGCACTGGC TGGCACGCGC AATGGTCTCG 
    TGCGAGGGGG CGGTCGCGCC GGATGCCGTG GTCGGGTGGA GGATTGGGCT 
    TTTCTTGGAT CTGGTTGATG CTTTCCCGCC ATGGTTCCAT GTGCCAAGCG 
    GTTGGCTAGA GCTTCTGGTG GAGAATGCAG TTGTTAAGCA GGTTTCGTCT 
    TGTGTATATC ACAATTTACC GGACGAGGTC ACTTTGTTTG AGGATCATAA 
    GTGCCCTGAA GAGCAGATTC CTTCCAAGTG TTCGCAGCTT TTATCCTTTC 
    CGTGCCAATG TTTGGAAGCA TAAAATTATC ATGCTACCGG GAGACACTAC 
    TCTTCAAAAG TACTGCATAT TCTCTAGCCC CAGTGAGGCA GGGATTTGCA 
    TTATTTAAGA GTCTTTGCAC TTGAAATCTC GGTTTTGTTT TGAAAGATAG 
    AAACACTGTA AACAGCACCA CTTCAAACCT TTCTTTTCTA CTCTGCTTTC 
    AAACTATGTT TTATCTGCTT GTGTAGAGGT CTTCTGTGGA GTTCTGATTT 
    TTCAAATTCT GTTATATTCT AAAAGAAATG ATCATAACTT GAGATACTTC 
    AAAACCAATG ATAATAATGT TATTAGATTC TTTTTTAGCC AAGAGGGGAT 
    TACTATTCAG GTAAACTCAT TTATGTATTC TTTCAGGGAT CTATAGCACT 
    AGACAAGTTT CATGCTTGGG GGCGGGGACT ATAGTCCGAA GATGGATATT 
    TGACACATCC ATGCCTGTTT GCAGATATTA TGTGGTCATA ACAATGAAGT 
    TTGGTTTGTA AGGTTCTCAA ATGATGGAAA CTATCTGGCA TCATCTTCAA 
    GTGATTGCAC GGCCATCATA TGGAAGGTGG AAGAGGATGA TACATTAACC 
    AAGAAGCACT GCCTCGTGGG TCACAAAAAT CCAATTTCTT TTGTTGCCTG 
    GAGCCCAAAT GACAGAATGC TGCTCACTTG TGGTAATGGA GAATCAGTAA 
    AACTGTGGAA CGTTGCTACT GGTGAATGCA GTCTTAAATT TAGCAGCTCA 
    GTTGGCCATA TTATCAATTC ATGTGCATGG TTCCCTAATT CGGAGAAAAT 
    AGTATGTGCC AGCTGTGAGC CTGAAAGTTC TCCAAAGAGG ATCTTCACTT 
    GTGACCTAGA AGGTCAAGAA CTGGAATCAT GGGTTGGAGA TAGAATACCT 
    AAAGTCAGTG ATATAGCTGT GACTCCTGAT AGCAAACATC TTATCTGTGT 
    ATGTTCCAAT GAAATTTGGA TTCGAGAACT TCCAAAGGGG CGGGAATGGA 
    GAATACGTGA GCAGCAGACG ATTTCGTCGC TATCTCTCTC TGGTGATGGA 
    CAATCACTGA TTGTCAACCT CAACAGCCAG GAAATTCATT TGTGGAGAAT 
    CAGTGAAAGT TCTACTGCGG CGGATAATAA ATTCAAGGGA CACAAGCAAG 
    GAAAGTTTGT GATTAGATCT TGCTTTGGTG GATCAAACTC TCTGTTCATA 
    GCTAGTGGCA GTGAGGATTC CCAGGTCTAC ATTTGGAAAA GGCACCTGGA 
    GACGCCAATA AAGGTCTTAT ACGGTCATTC ACTTACTGTA AATTGTGTGA 
    GCTGGAATCC TGCTAAGCCA CATATGCTGG CTTCGGCAAG TGATGACCGC 
    ACAGTTCGGA TTTGGCTAGC ACACAAAGGC TCACATCGCA CACGGTTGAC 
    GGCTTGATGT GGAAAGTTTT GTATGTTTTC CTTGTAAATA TATAGTTGTA 
    CATCTTGACT GTAGTAGTGT AGTGTGCACA GAGCAGTTGA GATTTTTTTT 
    CCCCGTAGAG CTTTTAGCTA CTTCAGAGGT AAACTTTGAA CAGGCAGAGG 
    CCCAGAAGTA GCAGTATACT TCATATATAT GCCTGTCTCG GATTAAAGTT 
    TTGCTCGTCT ACTCTGTAAA GAATCAAAGA TGCATCAGAA TTCAGAACCT 
    TGTATATTTT TGTGAGTTGC TACTCATTGG TATTGATATG TCTGGATGAC 
    TGGATGGATT C

    Gene models with high sequence identity

    1. AT5G43920.1 [+] show detail - transducin family protein / WD-40 repeat family protein
      E-value: 3e-88; Score: 323.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan WD40-repeat-containing domain 0
    Gene3D WD40/YVTN repeat-like-containing domain 7.40000780398385e-50
    ProfileScan WD40 repeat 2 0
    ProfileScan WD40 repeat 2 0
    ProfileScan WD40 repeat 2 0
    superfamily WD40 repeat-like-containing domain 4.2e-53
    HMMSmart WD40 repeat 3.79999862644791e-08
    HMMSmart WD40 repeat 4.79999776836274e-08
    HMMSmart WD40 repeat 220.000021756082
    HMMSmart WD40 repeat 230.000061930565
    HMMSmart WD40 repeat 66.0000033689451
    HMMSmart WD40 repeat 0.180000001062787
    HMMSmart WD40 repeat 4.39999967439747e-09
    HMMPanther PTHR22838 1.9000069431527e-99
    HMMPfam WD40 repeat, subgroup 1.2e-07
    HMMPfam WD40 repeat, subgroup 0.00051
    HMMPfam WD40 repeat, subgroup 700
    HMMPfam WD40 repeat, subgroup 15
    HMMPfam WD40 repeat, subgroup 3.1e-10
    HMMPanther WD REPEAT PROTEIN 26-RELATED 7.2e-08

    See the detailed result >

    AT5G43920.1

    Model type
    Protein coding
    Short Description
    transducin family protein / WD-40 repeat family protein
    Computational Description
    transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal LisH motif (InterPro:IPR006595), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G08560.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR