K02537

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	increased size (PATO:0000586) (Cauline leaf::Shape::large)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) increased width (PATO:0000600) (Rosette leaf::Shape::wide) epinastic (PATO:0000945) (Rosette leaf::Shape::epinastic) present in fewer numbers in organism (PATO:0001997) (Rosette leaf::Number::few) abnormal (PATO:0000460) (Rosette leaf::Others)
	fruit (PO:0009001)	decreased length (PATO:0000574) (Silique::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02537

Determination of introduced cDNA(s)

J023136O19 - Rice Full-length cDNAs - Original: J023136O19

full reading [+] show sequence

GATCTGTTCT TAACATCCTG CAGACAAACA CAAGTGTTGC TAGCTCACTT 
GGACCACACT TTTTCCCGCA AATTTCCCTA ATCTTTCTTG ACATGTTGAC 
AGTTTACAGA ATGTACAGTG AGCTTGTATC AAGCACCATT GCTGAAGGGG 
GACCTTTTGC CTCAAGGACC TCCTTTGTAA AACTCCTTAG ATCTGTCAAG 
AGGGAAACAT TGAAATTGAT TGAGACTTTT GTGGACAAAG CTGAAGATCT 
ACCACACATT GGGAAACAGT TTGTTCCTCC TATGATGGAT CCTATTCTTG 
CTGACTATGC TAGAAATGAT CCCGATGCTA GGGAATCTGA AGTTCTGTCC 
CTGTTTGCGA CGATCATAAA CAAATACAAA GGTGAAATGC TTGAAGACGT 
GCCTCGCATA TTTGAGGCTG TTTTCCAGTG CACTCTTGAG ATGATCACTA 
AAAACTTTGA AGATTACCCG GAGCATCGCC TCAAATTTTT CTCTTTGCTT 
CGTGCGATTG GCACCCATTG CTTCCAAGCA TTAATTCAGC TTTCAAGTCA 
GCAATTGAAA CTTGTGATTG ACTCTATCAA CTGGGCATTT AGACATACAG 
AGAGAAACAT CGCAGAGACT GGTCTCAGTC TATTGCTGGA AATTTTAAAG 
AACTTTCAGG CCTCAGGATT CCAAAATCAA TTCTACAAAA CTTATTTTTT 
GAATATTGAA CAAGAGATCT TTGCAGTTCT GACAGACACA TTCCACAAGC 
CTGGTTTCAA GCTTCATGTT TTGGTGCTGC AGCACTTATT TTGTGTGGTT 
GATGGTCTGA CGGAGCCTCT CTGGGATGCA TCCTCAGTAC CATACCAATA 
TACTGACAAC GCTATGTTTG TCCGAGATTA CACAATAAAA CTTTTAGGTT 
CATCATTTCC CAACATGACA CCTACTGAGG TTACAAAATT TGTTGATGGG 
CTTCTTAGTT CAAAACATGA CCTTCCAAGC TTCAAAAACC ATATTAGGGA 
TTTCCTGGTG CAATCAAAGG AGTTCTCGGC TCAGGATAAT AAGGATTTGT 
ATGCTGAAGA GGCTGCTGCA CAAAGAGAGA GGGAGCGTCA ACGAATGCTT 
GCCATTCCAG GGCTTATTGC CCCAAGCGAA TTACAAGATG AGATGGTTGA 
TTCATAATTC TGTGATTCAG CCTTGCTAAT CCAGTTCCAT TTCTTGCTTT 
GGCCTCCAAA CCTCTGGAGC CCTCAACACC CCATTGCCCA AGTTCTCTTC 
CAGGGTGGTG AAAGAAGGTG CCTGCTGTAA TTTTATTTTC GGTTACCTCC 
ACTTGGTGCT GATTGCGAGA TTTCTGCTAG TCAATAGGAA AGGCCAACTC 
AATTTTGTCG CAAGAGCTGT TTTGGACTGC CATTGGTTTG CAGTATGAGC 
TGTCAGGTTA ATGTGATGAC AGCAGCTCTT GTGCTCCTGT ATTTTGCTAA 
CATTGCTGCG TGTGCGGGGC CATCATATAG TATGATCACG GTACAACATT 
GTATCATGAT TTTTAGTTTA GTTTATAGAT CGGCCGCATT CTGTATTGTG 
GACAAGATTC AGGATAGAAA CTTATATTCG TAGTGTACTA TTTTGTG

Gene models with high sequence identity

AT5G17020.2 [+] show detail - exportin 1A
E-value: 1e-169; Score: 593.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Armadillo-type fold	0.0000000000000018
HMMPfam	Exportin 1, C-terminal	5.8e-127
HMMPanther	EXPORTIN 1 (CHROMOSOME REGION MAINTENANCE PRO	1.4e-212
HMMPanther	EXPORTIN 1/5	1.4e-212
Gene3D	Armadillo-like helical	3e-118

See the detailed result >

AT5G17020.2

Model type: Protein coding
Short Description: exportin 1A
Curator Summary: Encodes a member of the exportin protein family (XPO1A) which functions as receptors for nuclear export. Binds to a variety of proteins having leucine rich export signals.Along with XPO1B involved with development of the male and female gametophytes.
Computational Description: exportin 1A (XPO1A); CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), Exportin 1, C-terminal (InterPro:IPR014877), Armadillo-like helical (InterPro:IPR011989), Exportin-1/Importin-beta-like (InterPro:IPR013598), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: exportin 1B (TAIR:AT3G03110.1).
Link: InterPro Scan - TAIR