K02537

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02537

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • increased size (PATO:0000586)
    (Cauline leaf::Shape::large)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02537

Determination of introduced cDNA(s)

  • J023136O19 - Rice Full-length cDNAs - Original: J023136O19

    full reading [+] show sequence

    Nucleotide sequence: J023136O19 - full reading
    GATCTGTTCT TAACATCCTG CAGACAAACA CAAGTGTTGC TAGCTCACTT 
    GGACCACACT TTTTCCCGCA AATTTCCCTA ATCTTTCTTG ACATGTTGAC
    AGTTTACAGA ATGTACAGTG AGCTTGTATC AAGCACCATT GCTGAAGGGG
    GACCTTTTGC CTCAAGGACC TCCTTTGTAA AACTCCTTAG ATCTGTCAAG
    AGGGAAACAT TGAAATTGAT TGAGACTTTT GTGGACAAAG CTGAAGATCT
    ACCACACATT GGGAAACAGT TTGTTCCTCC TATGATGGAT CCTATTCTTG
    CTGACTATGC TAGAAATGAT CCCGATGCTA GGGAATCTGA AGTTCTGTCC
    CTGTTTGCGA CGATCATAAA CAAATACAAA GGTGAAATGC TTGAAGACGT
    GCCTCGCATA TTTGAGGCTG TTTTCCAGTG CACTCTTGAG ATGATCACTA
    AAAACTTTGA AGATTACCCG GAGCATCGCC TCAAATTTTT CTCTTTGCTT
    CGTGCGATTG GCACCCATTG CTTCCAAGCA TTAATTCAGC TTTCAAGTCA
    GCAATTGAAA CTTGTGATTG ACTCTATCAA CTGGGCATTT AGACATACAG
    AGAGAAACAT CGCAGAGACT GGTCTCAGTC TATTGCTGGA AATTTTAAAG
    AACTTTCAGG CCTCAGGATT CCAAAATCAA TTCTACAAAA CTTATTTTTT
    GAATATTGAA CAAGAGATCT TTGCAGTTCT GACAGACACA TTCCACAAGC
    CTGGTTTCAA GCTTCATGTT TTGGTGCTGC AGCACTTATT TTGTGTGGTT
    GATGGTCTGA CGGAGCCTCT CTGGGATGCA TCCTCAGTAC CATACCAATA
    TACTGACAAC GCTATGTTTG TCCGAGATTA CACAATAAAA CTTTTAGGTT
    CATCATTTCC CAACATGACA CCTACTGAGG TTACAAAATT TGTTGATGGG
    CTTCTTAGTT CAAAACATGA CCTTCCAAGC TTCAAAAACC ATATTAGGGA
    TTTCCTGGTG CAATCAAAGG AGTTCTCGGC TCAGGATAAT AAGGATTTGT
    ATGCTGAAGA GGCTGCTGCA CAAAGAGAGA GGGAGCGTCA ACGAATGCTT
    GCCATTCCAG GGCTTATTGC CCCAAGCGAA TTACAAGATG AGATGGTTGA
    TTCATAATTC TGTGATTCAG CCTTGCTAAT CCAGTTCCAT TTCTTGCTTT
    GGCCTCCAAA CCTCTGGAGC CCTCAACACC CCATTGCCCA AGTTCTCTTC
    CAGGGTGGTG AAAGAAGGTG CCTGCTGTAA TTTTATTTTC GGTTACCTCC
    ACTTGGTGCT GATTGCGAGA TTTCTGCTAG TCAATAGGAA AGGCCAACTC
    AATTTTGTCG CAAGAGCTGT TTTGGACTGC CATTGGTTTG CAGTATGAGC
    TGTCAGGTTA ATGTGATGAC AGCAGCTCTT GTGCTCCTGT ATTTTGCTAA
    CATTGCTGCG TGTGCGGGGC CATCATATAG TATGATCACG GTACAACATT
    GTATCATGAT TTTTAGTTTA GTTTATAGAT CGGCCGCATT CTGTATTGTG
    GACAAGATTC AGGATAGAAA CTTATATTCG TAGTGTACTA TTTTGTG

    Gene models with high sequence identity

    1. AT5G17020.2 [+] show detail - exportin 1A
      E-value: 1e-169; Score: 593.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Armadillo-type fold 1.8e-15
    HMMPfam Exportin 1, C-terminal 5.8e-127
    HMMPanther EXPORTIN 1 (CHROMOSOME REGION MAINTENANCE PRO 1.4e-212
    HMMPanther EXPORTIN 1/5 1.4e-212
    Gene3D Armadillo-like helical 3e-118

    See the detailed result >

    AT5G17020.2

    Model type
    Protein coding
    Short Description
    exportin 1A
    Curator Summary
    Encodes a member of the exportin protein family (XPO1A) which functions as receptors for nuclear export. Binds to a variety of proteins having leucine rich export signals.Along with XPO1B involved with development of the male and female gametophytes.
    Computational Description
    exportin 1A (XPO1A); CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), Exportin 1, C-terminal (InterPro:IPR014877), Armadillo-like helical (InterPro:IPR011989), Exportin-1/Importin-beta-like (InterPro:IPR013598), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: exportin 1B (TAIR:AT3G03110.1).
    Link
    InterPro Scan - TAIR