K02542

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02542

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
whole plant flowering stage (PO:0007016)
  • premature (PATO:0000694)
    (Adult plant::Flowering::early)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02542

Determination of introduced cDNA(s)

  • J033129F19 - Rice Full-length cDNAs - Original: J033129F19

    full reading [+] show sequence

    Nucleotide sequence: J033129F19 - full reading 
    GGCACTCATC TCAAGCTTTT CTCTCTCTCT CTCTCTTTGC ACTACATTCT 
    TGAATTCACA ACCTACAAAC AATCCAAGAA GATGTCTTGC TGCGGAGGAA 
    GCTGCAACTG TGGCTCTAGC TGCAAGTGCG GCAGCGGCTG CGGAAACATG 
    TACCCTGACC TGGCAGAGAA GACCACAAAC ACTTCAGCAA CTATGGTCCT 
    CGGGGTCGCA CCTGCGAAGG AGCAATTTGA GGGGGTTGGC AAGGCAGCAG 
    AGTCTGGTGA GGCTGCCCAT GGCTGCAGCT GTGGCTCCAG CTGCAAATGC 
    AATCCCTGCA ACTGCTAAAG GAGATGGTGA TCTGCATCAG CATGCTGATG 
    ATATGTACAA GTAAATAAAG AAGCCATTTG ATGCAATGGC TCCTGTGTGT 
    GTGTGTGTGC GACAGTGTGA GTCAGCTTGT GTTCTTCATC CTGATGTACT 
    AATGTGGCCT GTGAATATTG TGAGGTGTCT CCTGCTTTAC TCTCTTGTCA 
    GAATGTAATT AGAGGCTATA TATCATGGCC TTGTGATTGG AGCACCTGAA 
    GTTTTTACAG ACAACATTAT GTTTGTGTAA TATAATATGG TTTACTTGTG 
    C

    Gene models with high sequence identity

    1. AT3G09390.1 [+] show detail - metallothionein 2A
      E-value: 3e-08; Score: 55.50

     

    InterPro Scan Digest

    See the detailed result >

    AT3G09390.1

    Model type
    Protein coding
    Short Description
    metallothionein 2A
    Curator Summary
    metallothionein, binds to and detoxifies excess copper and other metals, limiting oxidative damage
    Computational Description
    metallothionein 2A (MT2A); CONTAINS InterPro DOMAIN/s: Plant metallothionein, family 15 (InterPro:IPR000347); BEST Arabidopsis thaliana protein match is: metallothionein 2B (TAIR:AT5G02380.1); Has 597 Blast hits to 588 proteins in 128 species: Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 2; Plants - 530; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

  • J013089O21 - Rice Full-length cDNAs - Original: J013089O21

    full reading [+] show sequence

    Nucleotide sequence: J013089O21 - full reading 
    GCCTCTCGCT CTTTCCGCCG CCCTCTCTGC TGCCTCTGCC CGGCGAGGGG 
    CGGCGCGATG AAGCGCACGA TGGACGCGCG GTGGGCGCAC ATCGTGTACG 
    CGTTGTTGGT GCCGGAGGCG TTCTTCCGCG ACCCCGACGG CCGCGACGGC 
    GTCGCCTCTC GCTCTCTCCG CCGCCCTCTC GCTATCTCCG CGGCCACGCT 
    GCTTTCTCTG CCCGGCGAGG GGCGGCGCTA TGAAGCACAC GACGAACGCG 
    CGGTGGGCGC ACATCGTGTG CGCGCTGCTG GTGCCAGAGG TGTTCTTCCG 
    CGACCCCGAC GACCACGACG GCGTCGACTG CTTGAGCTAT CTCGCTCTCT 
    TCGCTGCCCT CTGGCTCTCT CCGCCAGCGT CACCGCCACG TCATCTTCAC 
    CGTTGTCGCC ACCTCCCTCT ATTCCGCCGG CTCTCCCTAT TTCACCTCCG 
    TTGCTGTCTC CTCTGGTGTC ACCGTCGCCG CCGCCGCCGC TTGCCTCATG 
    TAGGTAGGTG CCGTCGCCTC ACGATCCTTC ACCAGTCGTC GCCACGACGA 
    GATCGTTCCT CCCTCCTATT CAGCCGCCAC ATCTCCCAGC GAGGAGCTCG 
    GGACCACCAG GTCCGGCGAC CCCGTCCTCC TTACAGGCGG ATCCAGAAAC 
    CCGGATGAGG ATGACAGCCG TTACCACCCT TTTCTCCTCT TTCATCTTCA 
    CATGTTAGAG GATCCCTCTC CATCTTCCTC AGCTCGCTGG CATGGGAGTC 
    GCACATGATA AGGGGTTTCA CGGGAGCCGG CAGCGACCAC TGCTTCTGTG 
    AGAGGACCGA AGATACCACC GCTCAAAATA GTGCATGGCT ACCTCGATCT 
    TGGTTTTAAT GGCTGCTAAC TGTCTTTTTC TGGTTTATTC GATGTGGATG 
    GCATGGGCTT CAAACTAATG GTTGTATGTG TGTTTGTGTT TCTTGCTTTT 
    CCCCCTCCCA ATTAGCCAAG TGAGACCTAT TGTTTCCCCT ACATTTGGAT 
    ATAGCTTCTC ATATATTTCT TCCTGCGGTT AGAGGAAATA GGATGCAGAC 
    AACTGAGCAG ATTTTCTCCA CCATGTTATA TCTGAAGAGG CAAATAGGTC 
    TGTACATGAT CTCTGCAGGT TATCGACTCT GGGAATACCA ACTCAAGTTT 
    GCTTGCCAAC AGCATTGTGG AACAAAATAC TATATTTATC TGTATATGTT 
    CATTGACTTA TTTTTTCCTT GAATTTCAGT TATGCTTATT CATTACAAAA 
    ATGTTTGCAT CTCCCTTTTC TCTACCGAAT AGGCACATTT AAATAAACCA 
    TATCTACCAT TGATCCATGA TGGAAATAAT GTATTGAAAG TTCATTTTGT 
    ACGCTGCATT TTTTGTTGTT TAAAGGTTAT AAATTTCATT ACATTAATCA 
    TTATCTTGCA CTAATATGTT GCAGAAAAAT ATCCGTTGTT GAGAAGATTT 
    AACACAGGGT CTTATTCCAA GAGGTGTGTT CTGCTGCTGT CAGAAGAAGT 
    ATTGCCGATT TATAAGAATT GACTTCTCAT ACATTCCATC TTAATTTCAT 
    ATTGAGTAGA TCGTTGCCAA TGAGCGTGCT ATTAAATTGG AGTACTCAAA 
    GTAAGTTTAA TAAGCCTCCA GTTTTATTTT TTCCTATCTA TGCGTATGAT 
    GTGGCAATGT TTCATTTGGC CTAAATAAAG AGAAGGTAGA CAGTGATCCA 
    GTTGG

    Gene models with high sequence identity

    1. AT3G14740.2 [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
      E-value: 2e-11; Score: 68.20

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther MIXED-LINEAGE LEUKEMIA PROTEIN 1.3e-09
    HMMPanther PHD FINGER PROTEINS 1.3e-09
    HMMPanther MIXED-LINEAGE LEUKEMIA PROTEIN 5.8e-13
    HMMPanther PHD FINGER PROTEINS 5.8e-13

    See the detailed result >

    AT3G14740.2

    Model type
    Protein coding
    Short Description
    RING/FYVE/PHD zinc finger superfamily protein
    Computational Description
    RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: homologue of trithorax (TAIR:AT2G31650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR