K02550

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02550

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02550

Determination of introduced cDNA(s)

  • J023063C24 - Rice Full-length cDNAs - Original: J023063C24

    full reading [+] show sequence

    Nucleotide sequence: J023063C24 - full reading 
    GAGGTAGCTA GCTAGCCCGA AGTTATCATC AAACTGATAT CTCCTCATCC 
    GATCCTCTTC TTGCTTCACC TGCTGCCCTC TGCTCCGGTC GATCGCTTGC 
    ATATTGCATA TTTGCATGCA GAGCTGCCAT GGGAATACCT TCTTTCTACA 
    GGTGGCTCGT GAACAGATAC CCAAGCATCG TCTCCCCGGC AAAGGAGAGC 
    CGCCCTGCAG ATGGCATCGT CGTCTACGAC AACCTCTACC TCGACATGAA 
    TCAAATCATC CATTATTCCT TCCACCCGCA GGACCAGATG AACGCCGGCA 
    CAGATGTGTG CGCTCCGACG ACGGTCAGCG AGGTTTTCGA GTCCATGTTC 
    GACTACCTGG ACCGCTTGTT TCGCATCGTC AGGCCGAGAA GGCTCCTCTA 
    CTTGGCAGTG GGTTCGTCGT AGATGTACAG CAGATGGATC GTTGGATCGA 
    TTCTCTCGTC AAATTACTTA GTACCATATT GTCGTTTCAA GAATTAATCA 
    TGGATTTGTT TTTGTTGGTT GGCTTGGCTT CAATTATTTC TGCAGTTTAT 
    GTACTTCTTT TATTATTCTC TCTCACTGCA CGCTCTCTTT TTTTTAAAAA 
    AAAATGGTTT AATTCCATGT GCAGATGGGG TTGCTCCGTG CGCCAAAATG 
    AACGGAATGC GAAGAGGACG ACGTTTCGCC TGGGTAGCCA GAGTCAATCC 
    TTTGCATTTA TTTATTTTCT TGCATGTCGA TCAGCTAGCT AGCTGCTGAA 
    GCAATTGATC GGTCGAGAAA AAGGCATCCA TGCTTTGGTT CAATTTTACA 
    GGCGAGTGAA GAGGAGGAAA TGCAGAAGAT ATCAGAAGGG GTCTCTGACC 
    CCAATGTCAT CACGCCAGGG ACTGAATTCA TGGAGAAGAT ATCGCAAGCG 
    CTCACGTACT ACATCCGTGC CAGATTGAAT AGCAGTGATC CAGGGTGGAA 
    ACACATCATG GTTAATTAAT TTTCTCTTGC ACTTCTTCAG TATAAATGTA 
    CCTCGTATTC TTTCTTAATT TCCCGTTTTT TTTATCCAAG GAGAGTCCAT 
    GCATGTTC

    Gene models with high sequence identity

    1. AT1G75660.1 [+] show detail - 5'-3' exoribonuclease 3
      E-value: 9e-23; Score: 104.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Putative 5-3 exonuclease 4.1e-11
    HMMPfam Putative 5-3 exonuclease 6.7e-25
    HMMPanther 5'->3' EXORIBONUCLEASE 2.7e-24
    HMMPanther 5'->3' EXORIBONUCLEASE 5.2e-11

    See the detailed result >

    AT1G75660.1

    Model type
    Protein coding
    Short Description
    5'-3' exoribonuclease 3
    Curator Summary
    Encodes a protein with similarity to yeast 5'-3'exonucleases and can functionally complement the yeast mutations. In Arabidopsis XRN3 acts as a suppressor of posttranscriptional gene silencing. Mutants accumulate excised miRNA products suggesting that XRN3 is involved in degradation of these products.
    Computational Description
    5'-3' exoribonuclease 3 (XRN3); CONTAINS InterPro DOMAIN/s: 5'-3' exoribonuclease 2 (InterPro:IPR017151), Zinc finger, CCHC-type (InterPro:IPR001878), Putative 5-3 exonuclease (InterPro:IPR004859); BEST Arabidopsis thaliana protein match is: exoribonuclease 2 (TAIR:AT5G42540.1); Has 4264 Blast hits to 3505 proteins in 442 species: Archae - 2; Bacteria - 295; Metazoa - 1361; Fungi - 725; Plants - 751; Viruses - 31; Other Eukaryotes - 1099 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR