K02620

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02620

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02620

Determination of introduced cDNA(s)

  • J033103L17 - Rice Full-length cDNAs - Original: J033103L17

    full reading [+] show sequence

    Nucleotide sequence: J033103L17 - full reading 
    GGCAAGCTGT GACACACTAA CACTCTACTT GTACTAGGTA GATCGCTAGA 
    ACAATGGCGT CCGGTGGCGA GGAGAAGAAG AGCAGGATCC TGGTGGTGGG 
    CGGCACGGGG TACATCGGCC GGCACGTCGT CTTGGCCAGC GCGCGGCTGG 
    GTCATCCCAC CACCGCCCTC GTCAGGGACC TCTCCCCCTC CGACCCCGCC 
    AAGTCGCAGC TTCTCCAGAG CTTCCGCGAC GCCGGCGTCA CCCTCCTCCA 
    CGGCGACCTC TACGACCACG CCAGCCTGCT CAGCGCCGTC CGCGACGCCG 
    ACGTCGTCAT CTCCACGCTG GGCGCGCTGC AGATCGCCGA CCAGACCAAG 
    CTCATCGCCG CCATCAAGGA GGGCGGCGGT GGCAACGTGC GGAGGTTCCT 
    GCCGTCGGAG TTCGGGCTGG ACCCGGACCA CACGGGCGCA GTGGAGCCGG 
    CCAGGTCCAT CTTCACCGGG AAGGCCGCCG TGCGGCGCGC CGTGGAGGCG 
    GCGGGAGTGC CGTACACGTA CGTGGTGTCC AACTACTTCG CCGGCTACGC 
    GCTGCCGACG ATCGGGCAGA ACCTGCCGCC GGCGCGGCCG GTGGATAGCG 
    TGGTGATCCT CGGGGACGGA GCCACCAAGG TGGTGTTCGT GGAGGAGGGG 
    GACATCGGGA CGTACACGGT GCTGGCGGCG GTGGATCCGC GGGCGGAGAA 
    CAAGACGGTG AACATACGGC CGGCGAAGAA CGCGGTGTCG CACGAGGAGC 
    TGGTGGCGCT GTGGGAGAAG AAGACGGGGA AGAAGCTGGA GAGGGTGTAC 
    GTGCCCGAGG ACGCCGTGCT CAAGCAAATC CAGGAGTCGG AGATCCCGTT 
    GAACATCGTG CTGTCGATCG CGCACGCAGG GTACATAAGG GGGGAGACGA 
    CGACGCCGTT GGATCCAGCC ACCGCCGTTG AGGCCACCCA GCTCTTCCCG 
    GACGTCCAGT ACACCACCGT CGATGACTAC CTCAACAGGC TCCTCTGAAA 
    TACATCGATA CATCCATCAT CTTTTATGTG CCAATAAAAT AATTAAGTCT 
    CTTCCTTAGT AATGTACATG TTCCTGCAAA TTTCACACCG TCGGTGAGAG 
    TGAGTGTCTT GGTTTAATCT GTCATGGATC ACTGTGCTCA GTTCAGCTCT 
    TCTTCAGGGC TTGATTTGCA TGTTAATGAA TTTATTTGCT TAAACATTAT 
    TAGTATG

    Gene models with high sequence identity

    1. AT1G75280.1 [+] show detail - NmrA-like negative transcriptional regulator family protein
      E-value: 3e-92; Score: 335.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam NmrA 4.8e-73
    Gene3D NAD(P)-binding domain 2.2e-18
    superfamily NAD(P)-binding domain 3.3e-61
    HMMPanther NAD DEPENDENT EPIMERASE/DEHYDRATASE 1.3e-10

    See the detailed result >

    AT1G75280.1

    Model type
    Protein coding
    Short Description
    NmrA-like negative transcriptional regulator family protein
    Curator Summary
    isoflavone reductase, putative, identical to SP:P52577 Isoflavone reductase homolog P3 (EC 1.3.1.-) {Arabidopsis thaliana}; contains Pfam profile PF02716: isoflavone reductase. Involved in response to oxidative stress.
    Computational Description
    NmrA-like negative transcriptional regulator family protein; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: response to oxidative stress, response to cadmium ion, response to cyclopentenone; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT1G75290.1); Has 2708 Blast hits to 2703 proteins in 629 species: Archae - 36; Bacteria - 1150; Metazoa - 16; Fungi - 663; Plants - 623; Viruses - 7; Other Eukaryotes - 213 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR