K02631

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02631

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)

Invisible phenotypes

Original: K02631

Determination of introduced cDNA(s)

  • J013154G15 - Rice Full-length cDNAs - Original: J013154G15

    full reading [+] show sequence

    Nucleotide sequence: J013154G15 - full reading 
    GTTACCACTC GCTCTTCCCC TCAATCAATC AAGCTTAAGC TAAGCTGGGC 
    GCGACAGCGA GAGAGAAACG AGGGATCGAT CGCGTCCACG CACGCCCGAT 
    CCCGGCCGCG AGATGAGCTT CCGCGGCGAG GAGAGCGGCG GCGAGGATGG 
    GGGGCGGACG GCGTCGGCGT CGGACCTGCG GAAGCCGTTC CTCCACACGG 
    GGAGCTGGTA CAAGATGTCG TCGGCGGGCG GCGGCGGCGG GATGGGGTCG 
    CGCCTCGGCT CCTCCGCCTA CTCCCTCCGC GACTCCTCCG TCTCCGCCGT 
    CCTCTGCACC CTCATCGTCG CCCTCGGCCC CATCCAGTTC GGCTTCACCT 
    GCGGCCTCTC CTCGCCCACC CAGGACGCCA TCATCTCCGA CCTCGGCCTC 
    ACCCTCTCCG AGTTCTCGCT GTTCGGGTCG CTGTCGAACG TCGGGGCAAT 
    GGTGGGCGCC ATCGCCAGCG GCCAGATCGC CGAGTACATC GGCCGCAAGG 
    GGTCTCTCAT GATCGCGGCA ATTCCTAACA TTATTGGGTG GCTCGCAATA 
    TCTTTTGCAA AGGACTCATC CTTTTTGTTT ATGGGCCGAT TGCTGGAAGG 
    ATTTGGGGTC GGCGTGATAT CCTATGTGGT GCCAGTTTAT ATAGCAGAAA 
    TTGCTCCACA AACAATGAGA GGAGCTCTTG GTTCAGTCAA TCAGCTTTCT 
    GTTACTATTG GCATATTGCT TGCCTACTTG TTAGGCATGT TTGTTCCCTG 
    GAGAATTCTC TCCGTTCTCG GTATTTTACC ATGTTCAATT CTGATACCTG 
    GATTGTTCTT TATCCCTGAA TCACCAAGGT GGCTGGCAAA AATGGGAAAG 
    ATGGAGGATT TTGAATCCTC GCTGCAAGTA TTGCGAGGAT TTGAAACAGA 
    CATCGCTGTA GAAGTAAATG AAATAAAGAG AACAGTTCAA TCATCACGGA 
    GGAGGACGAC AATACGATTT GCAGATATCA AGCAGAAGAG ATATAGTGTA 
    CCTCTAATGA TAGGAATTGG TCTCCTTGTA CTGCAGCAGT TAAGTGGTGT 
    GAATGGCATT CTATTTTATG CTGCTAGTAT CTTCAAAGCC GCCGGTCTTA 
    CGAATAGTAA TCTAGCAACA TTTGGTCTGG GGGTTGTTCA GGTGGTTGCT 
    ACTGGAGTGA CAACTTGGTT GACTGACAAA GCTGGTCGAC GACTCCTCCT 
    CATTATCTCT ACTACAGGGA TGACCATTAC TCTTGTTGTT GTTTCTGTGT 
    CATTTTTTGT GAAGGACAAC ATAACTAATG GTTCTCATTT ATACTCTGTA 
    ATGAGTATGC TTTCGCTGGT CGGGCTTGTG GCATTTGTGA TTTCATTTTC 
    TCTTGGTTTG GGAGCCATAC CATGGATCAT AATGTCTGAG ATTCTTCCTG 
    TAAATATCAA GAGCCTTGCT GGAAGCGTTG CAACCCTTGC AAACTGGTTG 
    ACGGCTTGGC TCATTACGAT GACAGCAAGC TTGATGTTAA GCTGGAGCAA 
    TGGAGGAACA TTTGCTATCT ATGCTGCTGT GTGTGCCGGG ACCCTCGTTT 
    TCGTATGCCT GTGGGTGCCG GAGACTAAAG GAAGAACACT TGAGGAAATT 
    GCATTTTCTT TCCGGTGAAG CTCAGGCCAA CGTTGTCTGG CGATCAGCCT 
    GGTGCACGTC AGTCGGCAAC AGATTTGGCT CCGTGAGCTA TCGGATTAGG 
    CATCAAGATT TGAATTCTTG AGTTCATGTG TATCTAAGGC AAGCGTGTAT 
    TGGTTGCATT TGTAATTTTG TATCATGTGT TCATGTATGT GCAATAGAAA 
    TATAGAATGG AGCAGTAGCA AGAGACAATA TAATGGACCA TTGCAAGTTG 
    TCACGCACGC CATGTGGATG GATGGAACAA TGAAGATGCC AATATGTCAT 
    GCCGTATGAT GAATTTTGAG CAAATATATA GCTGAGGGTT GTTAGTCC

    Gene models with high sequence identity

    1. AT1G19450.1 [+] show detail - Major facilitator superfamily protein
      E-value: 0; Score: 692.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Sugar/inositol transporter 9.6e-19
    FPrintScan Sugar/inositol transporter 9.6e-19
    FPrintScan Sugar/inositol transporter 9.6e-19
    FPrintScan Sugar/inositol transporter 9.6e-19
    FPrintScan Sugar/inositol transporter 9.6e-19
    ProfileScan MFS 43.939
    PatternScan Sugar transporter, conserved site 0
    PatternScan Sugar transporter, conserved site 0
    superfamily Major facilitator superfamily, general substrate transporter 1.3e-55
    HMMPanther SUGAR TRANSPORTER PLANT 5e-155
    HMMPanther SUGAR TRANSPORTER 5e-155
    HMMPfam General substrate transporter 3.5e-94
    HMMTigr Sugar/inositol transporter 4.5e-89

    See the detailed result >

    AT1G19450.1

    Model type
    Protein coding
    Short Description
    Major facilitator superfamily protein
    Computational Description
    Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G75220.1); Has 32354 Blast hits to 31683 proteins in 2302 species: Archae - 652; Bacteria - 16202; Metazoa - 5205; Fungi - 6407; Plants - 2489; Viruses - 2; Other Eukaryotes - 1397 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR