K02651

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02651

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02651

Determination of introduced cDNA(s)

  • J023091G01 - Rice Full-length cDNAs - Original: J023091G01

    full reading [+] show sequence

    Nucleotide sequence: J023091G01 - full reading 
    GACGAAGCAG ATCGAAGCAT CGCGCCCGAG CCAAACCTAA ATCCCTCGGA 
    GAGAGAGAGA GATAGAGAGG AGGAAAAAAT CAAATCTTTT TGAGGAAGAA 
    ATCATGGCGT GGCAGCAACC CATGGACGGA TCCCACGCGA GCGGGAGCAA 
    GGCGGCGGCG GCGGTGGCGG ATGGCCCGGG AACCCAGAGG ACGCAGTATC 
    CTTATGTGAC TGGCTCATCA ATTATTGCAC TGAAATACAA GGATGGTGTC 
    ATCATGGCAT CCGACACTGG AGCCTCATAT GGCTCAACTT TGCGATACAA 
    GAGCGTGGAG CGCATTAAGG CTGTTGGTAA GCATAGCCTT ATTGGAGCAA 
    GTGGGGAGTT CAGTGATTTC CAGGAGATTT TGCGCTATTT GGATGAATTA 
    ACCCTGTCCG ATCATATGTG GGATGATGGA AACTCCTTGG GTCCCAAGGA 
    GGTCCATAGC TACCTGACGA GAGTGATGTA CAACAGGCGC AACAAGTTTG 
    ATCCCCTCTG GAACTCCCTT GTAATTGGTG GGGTGAAAAA GGGTCCAAAG 
    GGTGAAGAGA AATATCTTGG CATGGTTAAC ATGATTGGTA CACACTTTGA 
    GGAAAACCAC ATTGCCACTG GGTTTGGGAA CCATATGGCA ATCCCAATAC 
    TTCGTACTGA ATGGCGCGAG GACATGACAT TTGAGGAAGC TGTCAAGCTT 
    GTTGAGAAGT GCTTGCTTGT CCTGCTGTAC CGTGACCGAT CATCTATTAA 
    CAAGTTCCAG ATTGCCAAGA TCACAACTGA GGGAGCGACC ATCTACCCGC 
    CATACTCATT GAAGACTTAC TGGGGCTTCG CTGCCTTTGA AAATCCGGCC 
    CAGGGTGCTG TAGGATCATG GTAGATTTAT TTATGCTGCA GAGGCTGAAT 
    GTCAGGCCAT GAACCAGGAT GAAGAAACAG GCTCTGTTGC TGAGAGGCCT 
    TGTGAAATGT TTTATCTGAA CATCAATGAA ACTCCAGATT TGCTTTGTAT 
    GACATTCTGA TCGTGCAACT TAGATTTCTA CCTTCTGTGG CCGTTAAGCC 
    TGGAACTATA TTATATATGA TGAAAGTCTG TTTTGTTTCG

    Gene models with high sequence identity

    1. AT1G56450.1 [+] show detail - 20S proteasome beta subunit G1
      E-value: 2e-90; Score: 329.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PROTEASOME SUBUNIT BETA TYPE 4 7.9e-112
    HMMPanther PROTEASOME SUBUNIT ALPHA/BETA 7.9e-112
    HMMPIR Proteasome endopeptidase complex, beta subunit 1.1e-158
    PatternScan Proteasome, beta-type subunit, conserved site 0
    HMMPfam Proteasome, subunit alpha/beta 4.3e-35
    Gene3D no description 1.9e-60
    superfamily N-terminal nucleophile aminohydrolases (Ntn h 1.2e-56

    See the detailed result >

    AT1G56450.1

    Model type
    Protein coding
    Short Description
    20S proteasome beta subunit G1
    Curator Summary
    20S proteasome beta subunit PBG1 (PBG1) mRNA, complete cds
    Computational Description
    20S proteasome beta subunit G1 (PBG1); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: response to cadmium ion, response to salt stress, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex, cytosolic ribosome; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), Proteasome endopeptidase complex, beta subunit (InterPro:IPR016295), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (TAIR:AT4G31300.2); Has 2530 Blast hits to 2530 proteins in 413 species: Archae - 597; Bacteria - 46; Metazoa - 632; Fungi - 578; Plants - 277; Viruses - 0; Other Eukaryotes - 400 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR