K02716

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02716

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02716

Determination of introduced cDNA(s)

  • J013124N15 - Rice Full-length cDNAs - Original: J013124N15

    full reading [+] show sequence

    Nucleotide sequence: J013124N15 - full reading
    TGCTCTCCGC ATTCTGTTTT CTACTATTCG CTAGTATACT GCTACTAGTT 
    CTTCTTCTTC TTCTTCTGTC TGATCCACCA GCAAGGTTAG GTTAGGCTTC
    TTCTTGAGCA AGCGATTCGG GGTAGTTGAG CTGGTTGCAA CCCCGCTTTG
    TTGATTCGTT CTTTGGCGGC AAATTCGATA TTCTGTTTCG CTCCCCCCTG
    GGTTTCTGCT TGGAATTTAG GGGGTCACGA GAGCAAACCA CGCGGTCCCG
    TTCTTGAATT GCTGGAGAGG GGTGGGGAAG AAAGATCGGG GGAAGAGGGG
    ACGCGAGCTC AGCGGGCTTT GGTGCTTAAG TTCTTTCGGG TTTGTGTTCT
    TGTGAAGTTC CTCTGGCATG GGGACGAGGA GGAGGAGGAA TCCGGTGATA
    TTCTTGTTCT TGTGGTTCGT CATGGCGTTT GAGCTGTGTG CATCTCTGAA
    TCATGAAGGT GTCGCTCTTA TGAGGTTTAA AGAGATGATT GATGCTGACC
    CATTTGATGC TCTGTTGGAT TGGGATGAAG GGAACGCCAG CCCCTGTTCT
    TGGTTCGGTG TGGAGTGCTC GGATGATGGT CGAGTTGTGG CCCTGAACTT
    ACCAAATCTT GGTCTAAAGG GTATGCTACC TCAGGAGATT GGAACACTTG
    CCCATATGCG TTCCATCATT CTACACAATA ACTCTTTCTA TGGAATCATC
    CCCACAGAGA TGAAATATTT ACATGAGTTA AAGGTGTTGG ATCTAGGATA
    CAATACTTTC AGCGGACCAT TTCCATCGGA GCTAAGAAAT ATTTTATCCC
    TGAAATTTCT CTTTCTCGAA GGCAACAAAC TTTCTGGCAG TTTGCCAATT
    GAATATGAGC TCGCCTCGAT GGACCAGACT TCTTTAAATA AGATATCTAC
    AGAAAGGAAC GAAGAGAATG CCACAAGAAG AAAACTTCTA GCAAGCAAAC
    AAAAACGTTC CCAAAAGAAC AGGATGCTTT TGTCTGGAAC ATCTGAATCA
    CCACTGGAAA ATGTTACAAT GCCAAAGTCT CACCCTGATA ATATAACAGT
    GCCACATCGT CCCGTAGCTC CTCGATCAAG TTCTCCACAG CCGCCACTCC
    CTTCCGAACC CATTCCCTCC CCTGCCCCTT CTATGCCCTC CCCTGCCCCT
    TCTGTATCCA CCACTACAAA CGGAACTTCA GGCCAAGAAA ACAAGAGCAA
    GACAGCAATA TATGCATCCA TCGGAGGAGT GGCCTGCTTG GTGGTTGTGG
    CCATGTCAGC TGCACTCATC CTTTGTTACC GGCACAGGAA GACTAGTACT
    GTGGTACCTT TTTCTCCAAC AGCAAGTGGG CAATTACATA CTGCTACTTT
    GGGAGGAATA ACTAAATTCA AACGCTCAGA GCTTGAAACA GCCTGTGAAG
    GTTTCAGCAA CATAATTGAC ACACTACCTA GATTCACATT GTATAAAGGA
    ACTCTCCCGT GTGGAGCAGA AATAGCTGCT GTGTCTACAT TGGTGACTTA
    CGCAAGTGGG TGGACAACTG TAGCTGAAGC ACAATTCAAG GATAAGGTTG
    AAGTCTTATC AAAAGTGAGC CATAAGAATT TAATGAACCT TGTGGGTTAC
    TGTGAAGATG AAGAACCATT CACTCGGATG ATGGTGTTTG AGTATGTTTC
    AAATGGAACA CTGTTTGAAC ACTTGCATGT TAAAGAAGCA GACCAATTAG
    ACTGGCAGTC ATGCTTACGG ATAGCGATGG GAGTGATGTA CTGTCTGAAC
    TACATGCAAC AGCTGAACCC TCCTGTACTG CTGAGAGACC TAAGTACTTC
    TTGCATATAC TTGACTGAAG ACAATGCTGC AAAGGTTTCC GACATCAGTT
    TTTGGGGTGA TAAAAAAGAA GACGAAAAAT CTGAGGCTTC TGATGAGCAC
    ATCACAGTTT ATAAGTTTGC TTTGCTTCTG CTTGAGACAA TCTCTGGAAG
    GCGCCCATAT TCTGATGATT ATGGCCTCCT TATTCTTTGG GCACATAGAT
    ACCTCATTGG TGACAAACCC CTGATGGACA TGGTTGACCC CACACTCAAA
    TCAGTCCCTG AGGAGCAAGT CAGAGAACTC ACAAAGCTGG TGAAATTATG
    CTTAAGTGAA GATCCCATGG AGAGGCCAAC GGTGGCAGAG GTAACCGCAT
    GGATGCAAGA GATCACTGGG ATTTCTGAAG AAGAGGCGAT TCCAAAAAAT
    AGTCCGTTGT GGTGGGCTGA ACTTGAGATC ATCACATCAT AAAAAGCCAG
    TTCATTGCGC AATATTATTG CTGCGGCAAC GGTGTCCATT CTTGCCTAGA
    TCACAGCAAA TTGTACAGTC GTTTAGGACC CATTTTGGGC AGGCAATTCA
    GTTGTACAGA TATGCCTGCA CTGCTCACAC CCATTCTTTC ATTCTTTGGT
    TCATGAAACA CACATAATCT CTGAAGTCCA CTAAACAGTT GTGACGAAAG
    CGAGGAGTAT AAATTTTCTA CTAGTTTCTA CACACAATTC CTGCACTGAA
    CAGATTTGTT TGAACAGTTG AGTCTACTCA GAGATACCTG AAGTCTGATG
    GTTGATACTT GAT

    Gene models with high sequence identity

    1. AT5G45840.1 [+] show detail - Leucine-rich repeat protein kinase family protein
      E-value: 7e-107; Score: 385.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.8e-28
    Gene3D no description 0.00056
    Gene3D no description 5.2e-17
    HMMPanther RECEPTOR PROTEIN KINASE-LIKE PROTEIN 1.1e-133
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 1.1e-133
    HMMSmart Tyrosine-protein kinase, catalytic domain 0.000046
    HMMSmart Serine/threonine-protein kinase domain 0.00015
    HMMPfam Serine-threonine/tyrosine-protein kinase 2.5e-20
    HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 0.000000000079
    superfamily Protein kinase-like domain 4.7e-30
    superfamily L domain-like 5.1e-30
    ProfileScan Protein kinase, catalytic domain 15.793

    See the detailed result >

    AT5G45840.1

    Model type
    Protein coding
    Short Description
    Leucine-rich repeat protein kinase family protein
    Computational Description
    Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT4G18640.1); Has 72134 Blast hits to 33602 proteins in 773 species: Archae - 8; Bacteria - 571; Metazoa - 4648; Fungi - 244; Plants - 63020; Viruses - 48; Other Eukaryotes - 3595 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR