K02719

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02719

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02719

Determination of introduced cDNA(s)

  • J023105M22 - Rice Full-length cDNAs - Original: J023105M22

    full reading [+] show sequence

    Nucleotide sequence: J023105M22 - full reading
    CCTCTTTCTC TCTCGTCTTC TTCGCCTCCC TCCCTCCGCC GCGCCTCCCC 
    ATCCCCTCCG CCGCCGCCGC TCTCCGCTCT TCCGGTCTCC TCGGCGATCT
    GCGCGGCCAA TCGCACAGGC GGGGCGCGCG CGCGGTGAAG GATCGCTCCA
    GTGAGGTGAG TGCAGGGGAG CTCTGCATCA GCTGGGCCAT GGAGAAGGCG
    GTAGCGGCGG CTTGTGGATG GAGGAAGGGT TTGGAGGAGG GAGAGCCGGA
    GTGGGAAGCG ATGGAGCTGG AGGCGGCGGC GCCGGCGATC TTTCCGGCGG
    ACGGTGGCGG CGGCGGCGTC AGGAGGAGTC CGGCGGCGTC GACGATCTTC
    TTGCCAGATC TTCTAGACGG GAGCTTTCTT TCTGACGATG ATCTAAGCCA
    GATGGAGGAT ATATTTCAAC CAGCACATGA GGATGACATC CACCATTTGT
    TACAAGGGCC CCAAGATGAA GCAGACCTGG ACAAATGGTT AGCAGGTCAA
    TCTTGTTCAC CCGCAGCGGA AGGCTCCATA ACAGTCCAAA CACCTACATA
    TCCCATACTA AATCTTATAG ATTTCATACC AAAGGACGGT TGTAAACGTG
    GCCCACGAGG TGCTCGCAAG AGACAGACAT TTCCATCACG AGGTGCTCGC
    ACGAGACGGG CTTTTCCATT GCAACAACTA TGCTTTGGAA CCACTAGAGA
    CAAAAGATGT CGTCTAAGAA AAAATAATGA TCACTGGACA ATCAAAGAAG
    TAAAAAATTT GGTACAAGGT GTTTCCAAGC ATGGGGTTGG ACGATGGACA
    GAATTGAAGA GAGATTTTTT CTCCACATCC ATTCGAACTT CTGTCCATCT
    GAAGGATAAA TGGAGGAACC TGTTGAAAGC ATGTGGGATC GATTTCACCT
    CCACAGCAAA GGGAAAAGCA CAGAAGACAA TGCTATGGCC CCTTGATAAA
    CGATTGACTG AACAGATTAT ACAGTTAGCA TATAAACACC CTTACCCAAG
    ACAAAAGTAC TAGAATAGTT ACTGGTTGTT CTAGCAGAGA AAGCAACTGG
    TAGAAGAGTC AGAAGGTATC AGAGCATATA GTAGAGTTGA TTTTAGTCAG
    GACCATCAGT AGATTTATCT CCTCCTTAAC TAGTAGCTAC TGAAATTTAA
    ACGTTTTTTT GTCGTTTTGG TTACAATTTC CTCTCCACAT TTGGGATTTT
    GTAATTGGAT TGTAAATACT GTCTTATTGA CAAATTGGAG GGGGTTCAGT
    CTCCAGGATC TTACTTGGTT TTACTG

    Gene models with high sequence identity

    1. AT2G37025.2 [+] show detail - TRF-like 8
      E-value: 0.00000000000002; Score: 77.40

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Homeodomain-related 0.00000000000024
    HMMPanther TELOMERIC REPEAT BINDING PROTEIN 1 0.00086
    HMMPanther TELOMERIC REPEAT BINDING PROTEIN 0.00086
    superfamily Homeodomain-like 0.000000026
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 10.625
    HMMSmart SANT, DNA-binding 0.00063

    See the detailed result >

    AT2G37025.2

    Model type
    Protein coding
    Short Description
    TRF-like 8
    Computational Description
    TRF-like 8 (TRFL8); FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: TRF-like 6 (TAIR:AT1G72650.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR