K02739

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02739

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02739

Determination of introduced cDNA(s)

  • J023067B12 - Rice Full-length cDNAs - Original: J023067B12

    full reading [+] show sequence

    Nucleotide sequence: J023067B12 - full reading 
    GGATCTCTCC CCCCCAAGCA AAAAGCCCAA CAACCGCCCC CGCGCGCCGA 
    TGGAGACGAG CCGCCGTCCC GCCCGTCCGC GCCTTGCGTT TCTGAGGCCG 
    TTCAGGCGGA ACGCATGAGC AAGGCGTTCC CCCACGGCCG GTTGCTTATC 
    GCACAGGGCC TTTCTGCTAC GCCGGCGCCC GACCGGCTCG GCGTTTTCGC 
    GGTGCGCGCG CGCGTGGCTG GCATGCATTA TCCGATACGG ATCGACTCGA 
    TCGACCGACC AGCTGGTCGC AATCGGACTC CTGTTCCGAT TAGGAATATT 
    GGTGATCGGT GCATGCATCT CTTATCCCTC TCGTCTATAT AACTCAGTCA 
    GGGGACAAAC GAGTTCGTCC AAGTGCAAGT AACCCCACGT TCTTTGTGCT 
    TGTGACCGCA GTCGTGGTTT GCAATCTTTG TGTTCGGTGA GGTTTGTTTG 
    CTGCATGCCA TGGCCGAGCA GCAGCAGCAG CAAGCGCCGC TGCTGCAGAG 
    GCCAGCCGCT GCACCGCCGT CGTCGAGCCG GCTGCCGGAC TTCAAGCAAT 
    CGGTGAAGCT CAAGTACGTG AAGCTGGGGT ACCACTACCT CATCACCCAC 
    GGCGCGTACC TCCTGCTCGC CCCGCTCCCG GGCCTCGTGG CGGCGCACCT 
    CTCCACCTTC ACGCTGGGCG ACCTCGCCGA CCTGTGGCAA AACCTCCAGT 
    ACAACCTCGT CTCCGTGCTC CTCTGCTCCA CGCTGCTGGT GCTCGTCTCC 
    ACCGCCTACT TCCTCACGCG CCCGCGCCCC GTCTACCTCG TCGACTTCGC 
    GTGCTACAAG CCCGACGACG AGCGCAAGTG CAGCCGCGCG CGCTTCATGA 
    ACTGCACCGA GCGGCTCGGC ACGTTCACGC CGGAGAACGT CGAGTTCCAG 
    CGCAAGATCA TCGAGCGCTC GGGCCTCGGC GAGGACACGT ACCTCCCCGA 
    GGCGGTGCTC AACATCCCGC CCAACCCCTC CATGGCCAAC GCGAGGAAGG 
    AGGCCGAGAT GGTCATGTAC GGCGCGCTCG ACGAGCTGCT CGCCAAGACC 
    GGCGTGAACC CCAAGGACAT CGGCATCCTG GTCGTCAACT GCAGCCTCTT 
    CAACCCGACG CCGTCGCTGT CCGCCATGGT GGTGAACCAC TACAAGCTGA 
    GGGGCAACGT CGTCAGCTAC AACCTCGGCG GCATGGGGTG CAGCGCCGGC 
    CTCATCTCCA TCGACCTCGC CAAGGACCTC CTGCAGGTGT ACCCCAACAC 
    GTACGCCGTG GTGATCAGCA TGGAGAACAT CACGCTCAAC TGGTACTTCG 
    GCAACGACCG CTCCATGCTC GTGTCCAACT GCCTCTTCCG CATGGGCGGC 
    GCGGCGATCC TCCTCTCCAA CCGCGGCTCC GCGAGGCGGC GCTCCAAGTA 
    CCAGCTGGTG CACACCGTGC GCACGCACCG CGGCGCCGAC GACCGGTGCT 
    TCGGCTGCGT GACGCAGCGG GAGGACGCTG ACGGGAAGAC CGGCGTGTCG 
    CTGTCCAAGG ACCTGATGGC GGTGGCCGGC GAGGCGCTCA AGACCAACAT 
    CACCACGCTG GGCCCGCTGG TGCTCCCCAT GTCGGAGCAG CTCCTCTTCT 
    TCGCGACGCT CGTCACCCGC AAGGTGCTGA AGCGGAAGGT GAAGCCGTAC 
    ATCCCGGACT TCAAGCTGGC GTTCGAGCAC TTCTGCATCC ACGCCGGCGG 
    CCGCGCCGTG CTGGACGAGC TGGAGAAGAA CCTGCAGCTG TCGGACTGGC 
    ACATGGAGCC GTCGCGGATG ACGCTGCACA GGTTCGGGAA CACGTCGAGC 
    AGCTCGCTGT GGTACGAGCT CGCCTACGCC GAGGCCAAGG GGCGGATCAA 
    GAAGGGGGAC AGGACGTGGC AGATCGCCTT CGGCTCCGGC TTCAAGTGCA 
    ACAGCGCCGT GTGGAGGGCG CTCCGGTCGG TGAACCCGGC CAAGGAGAAC 
    AACTTCACCA ACCCGTGGAT CGACGAGATC CACCGCTTCC CGGTGCCCGT 
    CCCCAAGGTG TCGGCCATAT GATCCAACCA CACGCGTTGG CTGTTTGCAC 
    TGAAACATTA TTACTAGCAG TAGCTTAGTA GTAGTAGTAG AAATGAACTA 
    GGATCTATTC GTTATTGCTT GTGTATTGAT CTGATCATAT CTGGTTCGCT 
    GTTCTTATGT GAAGTTGCTC TGTCGGTCTG GCATGTAAGA AGGTCTGATC 
    ATAAGTTCAC TTCAAAAGTT AATTTACATC TTC

    Gene models with high sequence identity

    1. AT2G26640.1 [+] show detail - 3-ketoacyl-CoA synthase 11
      E-value: 0; Score: 741.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Thiolase-like 5.7e-99
    HMMPfam FAE1/Type III polyketide synthase-like protein 1.3e-147
    HMMPfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal 1.9e-11
    HMMPIR Very-long-chain 3-ketoacyl-CoA synthase 0
    Gene3D Thiolase-like, subgroup 1.3e-56
    Gene3D Thiolase-like, subgroup 2e-25

    See the detailed result >

    AT2G26640.1

    Model type
    Protein coding
    Short Description
    3-ketoacyl-CoA synthase 11
    Curator Summary
    Encodes KCS11, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).
    Computational Description
    3-ketoacyl-CoA synthase 11 (KCS11); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity; INVOLVED IN: response to cold, response to light stimulus, response to osmotic stress; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 2 (TAIR:AT1G04220.1); Has 3664 Blast hits to 3650 proteins in 908 species: Archae - 0; Bacteria - 1588; Metazoa - 0; Fungi - 2; Plants - 1914; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR