K02802

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02802

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02802

Determination of introduced cDNA(s)

  • J033091I05 - Rice Full-length cDNAs - Original: J033091I05

    full reading [+] show sequence

    Nucleotide sequence: J033091I05 - full reading 
    GCTCTCTCTC CTTTTCTTTT CTCTCACTTT CTTCCTCAGT CGGCCAGCGC 
    AGCCGGCGGG GTGGGGAGGA GGCTGGTGGG GGAGGCGGGA GTCCGGCGAC 
    AACGACGCGG CGACGAGGCG GCAGGCGACG AGGCGACGAC GCTGGAGAAG 
    GGAAACGCCT GCATCCCGCC GCCTCGCTTT CGCCTCCCAG ACCAACGGGA 
    GATGGGGTTG GCGATGTTTG GGCACACGCC GTTGTTTCCA TTACACCACG 
    CCGCCGCCGC CGCCGACGAC GACGACGACA ACGACACCTC CCCACTGGCG 
    ATCGAGACCA GTAGAGGCAC ATGCGAAGTG GGTTCCCATG GCGCCATGAT 
    GGCAGGAAGC AGTGAGAGCG AGTACTACTC GGAGGAGGAG GTGGGATGGG 
    AGGAGGAAGG TCTCGGAAGC AAAGGCGTGG AGGAGAAGAG GGAGTGGGCA 
    CTGAAGCGGC TCGACGACCT CGGCAAGCGC GGGGTGTGCT ACCTCAGCCG 
    CGTCCCTCCC AACATGAACC CGTCGCACGT CCGTCTCCGT CGGTTGCTCT 
    CCAAGCACGG CGAGGTGTAG ATGATTTACC TTGTCTAGTT CATGCCACTA 
    GAGTTGAAGC CGTGTTCGAT TCAATTTGGG ATATGTATGG TGGTTAATTT 
    CAAATCTCGG TGCTTATTCG AGAAACCTGG AAGCTGCAAT TACTATCTAG 
    TACTACCTCC ATATTTTAAT GTATGACGTC GTTGACTTTT TATCTAACAT 
    TTAACTATTC GTCTTATT

    Gene models with high sequence identity

    1. AT3G56510.2 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
      E-value: 0.0000007; Score: 51.20

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SUBFAMILY NOT NAMED 0.00000027
    HMMPanther FAMILY NOT NAMED 0.00000027

    See the detailed result >

    AT3G56510.2

    Model type
    Protein coding
    Short Description
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Computational Description
    RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: TATA-binding protein binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

  • J033080C14 - Rice Full-length cDNAs - Original: J033080C14

    full reading [+] show sequence

    Nucleotide sequence: J033080C14 - full reading 
    GGCCGCCGCC GCCGCCACCG CCGCCGCACT CTGCAACCGC GCCGCGTGGA 
    GGGAGGGAAG GACGAAGGAG GAAGGAGATG GAGCGGGTCG GCGGCGGGGA 
    GAAGCAGCTG GAGGACTGCA CCGTGTCCAA TGCTCTCGGC ACCTGGTTCT 
    TCTCAGTTGC TGGTGCTCTT GTTGCTATTC CTGTGGGGAT AAAGAAGAAA 
    TCCTTGGCAC CACTGGTTTT CTTTGGCACT ACTGGAACTA TGCTTGATAT 
    CATCATGGGC ATTAGCCAAT GCGAGCGGGA GCATGCTGAG CGGCAGATGA 
    AGCTTTTAGA AGCTCAAAAC CTTTCTGCCA ATGCTTCAGC AGATGGTGAA 
    AACTGATCAA GTTCTTTGAT TATTAGGACA AGCAAAATGC AGCTGTTGTT 
    TTTCGTAACT TACTAGTTGA TCTGTAATTG GCATGATCTT CTGCTCTTGT 
    ACAAATTTGT CCATCCAAAA TACGGAAATC TTGATATTTT AAATATTCTC 
    CAATAAGTAT ATTGAGCAGT GGTTAATCCT TG

    Gene models with high sequence identity

    1. AT1G21930.1 [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G42150.3); ...
      E-value: 3e-30; Score: 127.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G21930.1

    Model type
    Protein coding
    Computational Description
    unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G42150.3); Has 43 Blast hits to 43 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR