K02806

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	increased width (PATO:0000600) (Rosette leaf::Shape::wide)
	fruit (PO:0009001)	decreased length (PATO:0000574) (Silique::Shape::short)
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02806

Determination of introduced cDNA(s)

J033133B01 - Rice Full-length cDNAs - Original: J033133B01
full reading [+] show sequence
Nucleotide sequence: J033133B01 - full reading

GAGTTTGCTT TTGCTCCACC CACCACCACC GCTGCTTCCA AGTTCCAACC
GCTCCCTCTC TCGTCGCTGA GCTCTCCTCC GGTGGGCGGC GCGGCGATGG
CGGGGGACCC GGCGGCGGCG GCAGCGGCGG TTGGGGCGAT GAGGCCGTGG
AACTACGTGG TGACGGCGCA CAAGCTGACG GTCGTCGCCC GCTCCTGCGT
CGGCAACTTC ACCGCGCCCG ATCACCTCGA CCTCTCGAAA TTTACCCGTA
TTGAGATTGG AGTATCTGCT TACTCATCAG GGTCTTCAGG TCAGACAGAT
TTGCCTCGAC CAGAATATGT TCCTTCTGTT TGAACCTATC TATTATTATG
GACAGCAAAT AACTGTGCCT TGTTGTTAGC ATCAATTGTT GAAAAGGTGT
TTTTTAAGGT TATTCATAAT GGCTACTGTT GTTCAGATAA ATGCTGATAT
ACTTTTAGTT GACAAGTTAG AATTTGTCCT GGCAGATCAA CTGGTTACAT
GATATTCTTA CAACTATAAC TCTGTAAGAC CTTTTCTTTC CTTACCAGCC
TATGCTTGAT GCACCTGTGT ATGGTAGAAT TGCAACAATT GAGCTCTTCC
GTCCATGTGT AAGTTTGTAC TCTGTTTCTA CAGCTAAAAA ATTGAAAGAT
TCTCCCTGCC TCC
Gene models with high sequence identity
1. AT4G05420.2 [+] show detail - damaged DNA binding protein 1A
  E-value: 0.00000007; Score: 54.30
InterPro Scan Digest

See the detailed result >
AT4G05420.2

Model type

Protein coding

Short Description

damaged DNA binding protein 1A

Curator Summary

Structurally similar to damaged DNA binding proteins.DDB1a is part of a 350 KDa nuclear localized DET1 protein complex. This complex may physically interact with histone tails and while bound to chromatin- repress transcription of genes involved in photomorphogenesis.

Computational Description

damaged DNA binding protein 1A (DDB1A); FUNCTIONS IN: protein binding, DNA binding; INVOLVED IN: negative regulation of transcription, negative regulation of photomorphogenesis; LOCATED IN: nucleus, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Cleavage/polyadenylation specificity factor, A subunit, C-terminal (InterPro:IPR004871); BEST Arabidopsis thaliana protein match is: damaged DNA binding protein 1B (TAIR:AT4G21100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

Link

InterPro Scan - TAIR

J013132I07 - Rice Full-length cDNAs - Original: J013132I07

full reading [+] show sequence

GGAGAGAGAG AGAGAAAGAA AAGTATGACA AGGAAATGAA AGAAATGAGA 
CAACAACCTT GTTAGCCTTC CTCTTCCATC CTCTCCTCTC CACTTCTTGT 
TCTATCTTCT TCTTGGAGAG CTAGCAGGAG GAGCAAAGCA GTAGGGGAGA 
GAGAAGAGAG AGTGAGCCAG GGGGGAAGAA GGAAGGAAGA AGAAGAACAC 
TGCTGCCAAT CCGAGGAACA ATCCAACGGG GGCAACAGAA AAGGAAATTT 
TCTGCTCCTG CGGTTGAGTT GGTAAAATTT GGGAGGTGAT GGCATCGAAT 
TCATCGGCTG CAGCTGCGGC GGCGTTCTTC GGGATTAGCA GGGATGGGGA 
CCAGCATGAC CAGATTAAGC CGCTGATATC ACACCAACAG CACCAGCACC 
AGCAGCAGCA GCTGGCAGCG TCACTGACCG GCGTGGCAAC AGCGGCGCCT 
ACTGCGGCGT CCAGCCAAGG CGCACCGCCG GCGGCGCCAC CGGCCAAGAA 
GAAGAGAAAT CTACCAGGCA ATCCATCCAA CCAACCCAAG TACCCTTTTA 
CGATTTCAGC CATGCATGCA TACATATCTG TTCTCCGAGA TCTTGTCTCG 
ATTGATTGGA GTCTTATCAT TTGTTTTCTG ACAGTGAAAG CATCTTATCG 
ATCTCACAGG CGCGCTTGAT GATTTTCTTT TTCTCTCTCT ATCTAGTCTC 
TATACTTAAT TGTTGCATCT GTTCTTTGGT TTCTTGCTTC CGAAATATCA 
TTCCTCATCA GTGCTGAATT GCCTGTTTCT TTTTTATGTA GACTGAATTT 
TGTGAACTGG TTCTTTGTCT TTTTGTTTTT TTACCCAGTT CGTACTTCGT 
CATCTATCTT TTCCTTATTC CATTTCTTCA GTCTGGAATC TGGATCCCTT 
CCCTACCATG CATCTAGGCG TCTACCAGTT CAATAAAAGC GAATAGACAT 
GAACAACTTG GCTTTCATCA GTTTGCTCCT AGTACTTCAT TTAAAGCTCT 
GTACTGTCAC CTGAAAGAAA GAGAATTAAT TCAGGTGAAG AATACAGAAA 
GTACTCCGTC TTTCATGGTT AAACTATTCT TTTTTTTCCC TTGTCAAGGA 
GTATCGATCT CTTGCGTTTT AGTTAGATCA ATCAGTAGTC CCAGAATTCC 
CAGTTCTTCC ATGAGAAGTT TTAAGAGCAT GGGCATAGTT CCATATATTT 
CGCAAGATAA AACAAAATCA GTTCATTTTT CAAGATTCCA TGCATGTACA 
TGAGCTGTTA TCCTCTTCAG TAGTATAGAT CAATATTCTT TTTTCTTCCC 
CCAATTATGA GAAGCAAATA GGAGCCATGG CACACAATCC ATGTCTATTC 
CCTTGTTCTC TATATCTCTT CAAGCAAAGT TCTTTTTTCC TAAAATCTCA 
TGCAAATATT CCCTTCTCCA TGGTCTAGTT TGTCTCTACC TCTCAGCCCC 
ACC