K02806

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02806

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02806

Determination of introduced cDNA(s)

  • J033133B01 - Rice Full-length cDNAs - Original: J033133B01

    full reading [+] show sequence

    Nucleotide sequence: J033133B01 - full reading
    GAGTTTGCTT TTGCTCCACC CACCACCACC GCTGCTTCCA AGTTCCAACC 
    GCTCCCTCTC TCGTCGCTGA GCTCTCCTCC GGTGGGCGGC GCGGCGATGG
    CGGGGGACCC GGCGGCGGCG GCAGCGGCGG TTGGGGCGAT GAGGCCGTGG
    AACTACGTGG TGACGGCGCA CAAGCTGACG GTCGTCGCCC GCTCCTGCGT
    CGGCAACTTC ACCGCGCCCG ATCACCTCGA CCTCTCGAAA TTTACCCGTA
    TTGAGATTGG AGTATCTGCT TACTCATCAG GGTCTTCAGG TCAGACAGAT
    TTGCCTCGAC CAGAATATGT TCCTTCTGTT TGAACCTATC TATTATTATG
    GACAGCAAAT AACTGTGCCT TGTTGTTAGC ATCAATTGTT GAAAAGGTGT
    TTTTTAAGGT TATTCATAAT GGCTACTGTT GTTCAGATAA ATGCTGATAT
    ACTTTTAGTT GACAAGTTAG AATTTGTCCT GGCAGATCAA CTGGTTACAT
    GATATTCTTA CAACTATAAC TCTGTAAGAC CTTTTCTTTC CTTACCAGCC
    TATGCTTGAT GCACCTGTGT ATGGTAGAAT TGCAACAATT GAGCTCTTCC
    GTCCATGTGT AAGTTTGTAC TCTGTTTCTA CAGCTAAAAA ATTGAAAGAT
    TCTCCCTGCC TCC

    Gene models with high sequence identity

    1. AT4G05420.2 [+] show detail - damaged DNA binding protein 1A
      E-value: 7e-08; Score: 54.30

     

    InterPro Scan Digest

    See the detailed result >

    AT4G05420.2

    Model type
    Protein coding
    Short Description
    damaged DNA binding protein 1A
    Curator Summary
    Structurally similar to damaged DNA binding proteins.DDB1a is part of a 350 KDa nuclear localized DET1 protein complex. This complex may physically interact with histone tails and while bound to chromatin- repress transcription of genes involved in photomorphogenesis.
    Computational Description
    damaged DNA binding protein 1A (DDB1A); FUNCTIONS IN: protein binding, DNA binding; INVOLVED IN: negative regulation of transcription, negative regulation of photomorphogenesis; LOCATED IN: nucleus, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Cleavage/polyadenylation specificity factor, A subunit, C-terminal (InterPro:IPR004871); BEST Arabidopsis thaliana protein match is: damaged DNA binding protein 1B (TAIR:AT4G21100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR
  • J013132I07 - Rice Full-length cDNAs - Original: J013132I07

    full reading [+] show sequence

    Nucleotide sequence: J013132I07 - full reading
    GGAGAGAGAG AGAGAAAGAA AAGTATGACA AGGAAATGAA AGAAATGAGA 
    CAACAACCTT GTTAGCCTTC CTCTTCCATC CTCTCCTCTC CACTTCTTGT
    TCTATCTTCT TCTTGGAGAG CTAGCAGGAG GAGCAAAGCA GTAGGGGAGA
    GAGAAGAGAG AGTGAGCCAG GGGGGAAGAA GGAAGGAAGA AGAAGAACAC
    TGCTGCCAAT CCGAGGAACA ATCCAACGGG GGCAACAGAA AAGGAAATTT
    TCTGCTCCTG CGGTTGAGTT GGTAAAATTT GGGAGGTGAT GGCATCGAAT
    TCATCGGCTG CAGCTGCGGC GGCGTTCTTC GGGATTAGCA GGGATGGGGA
    CCAGCATGAC CAGATTAAGC CGCTGATATC ACACCAACAG CACCAGCACC
    AGCAGCAGCA GCTGGCAGCG TCACTGACCG GCGTGGCAAC AGCGGCGCCT
    ACTGCGGCGT CCAGCCAAGG CGCACCGCCG GCGGCGCCAC CGGCCAAGAA
    GAAGAGAAAT CTACCAGGCA ATCCATCCAA CCAACCCAAG TACCCTTTTA
    CGATTTCAGC CATGCATGCA TACATATCTG TTCTCCGAGA TCTTGTCTCG
    ATTGATTGGA GTCTTATCAT TTGTTTTCTG ACAGTGAAAG CATCTTATCG
    ATCTCACAGG CGCGCTTGAT GATTTTCTTT TTCTCTCTCT ATCTAGTCTC
    TATACTTAAT TGTTGCATCT GTTCTTTGGT TTCTTGCTTC CGAAATATCA
    TTCCTCATCA GTGCTGAATT GCCTGTTTCT TTTTTATGTA GACTGAATTT
    TGTGAACTGG TTCTTTGTCT TTTTGTTTTT TTACCCAGTT CGTACTTCGT
    CATCTATCTT TTCCTTATTC CATTTCTTCA GTCTGGAATC TGGATCCCTT
    CCCTACCATG CATCTAGGCG TCTACCAGTT CAATAAAAGC GAATAGACAT
    GAACAACTTG GCTTTCATCA GTTTGCTCCT AGTACTTCAT TTAAAGCTCT
    GTACTGTCAC CTGAAAGAAA GAGAATTAAT TCAGGTGAAG AATACAGAAA
    GTACTCCGTC TTTCATGGTT AAACTATTCT TTTTTTTCCC TTGTCAAGGA
    GTATCGATCT CTTGCGTTTT AGTTAGATCA ATCAGTAGTC CCAGAATTCC
    CAGTTCTTCC ATGAGAAGTT TTAAGAGCAT GGGCATAGTT CCATATATTT
    CGCAAGATAA AACAAAATCA GTTCATTTTT CAAGATTCCA TGCATGTACA
    TGAGCTGTTA TCCTCTTCAG TAGTATAGAT CAATATTCTT TTTTCTTCCC
    CCAATTATGA GAAGCAAATA GGAGCCATGG CACACAATCC ATGTCTATTC
    CCTTGTTCTC TATATCTCTT CAAGCAAAGT TCTTTTTTCC TAAAATCTCA
    TGCAAATATT CCCTTCTCCA TGGTCTAGTT TGTCTCTACC TCTCAGCCCC
    ACC

    Gene models with high sequence identity

    Not founds.

     

    InterPro Scan Digest

    See the detailed result >