K02812

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02812

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02812

Determination of introduced cDNA(s)

  • J023077M13 - Rice Full-length cDNAs - Original: J023077M13

    full reading [+] show sequence

    Nucleotide sequence: J023077M13 - full reading 
    CCTCACCGCC GCTCTCTCTT CCTCTCCAAC ATGAATATGC CATTGCTACT 
    CCTCATCGCC ATCGTCGTCG TCTCCCTCTC CCATGGCAAC GGGGAGCAGA 
    CCGACCTCAC GCGGGAGACG TTCCCCGCGG GCTTCGTCTT CGGCACCGCG 
    TCGTCGGCGT ACCAGGTGGA GGGGAACGCC CTCCAGTATG GCCGAGGGCC 
    CTGCATCTGG GACACCTTCC TGATGCAACC TGGTGTAACT CCTGATAATT 
    CGACCGCGAA TGTGACCGTC GACGAGTACC ACCGCTACAT GGATGATGTG 
    GACAACATGG TGAGAGTGGG CTTCGACGCG TATCGCTTCT CGATCTCCTG 
    GTCTCGCATT TTCCCCAGTG GACTTGGGAA GATTAACAAA GACGGCGTGG 
    ATTATTACCA CAGGCTCATT GATTACATGC TTGCTAACAA CATTATTCCA 
    TATGTTGTGC TCTACCACTA CGACCTTCCA CAGGTGCTCC ATGATCAATA 
    CAAGGGATGG CTACACCCCA GAATTGTGAG AGATTTTGTG AGATTTGCAG 
    ACTTCTGCTT CAAGACATAT GGTCATAAGG TGAAGAACTG GTTTACCATT 
    AACGAACCTA GGATGATGGC AAATCATGGC TACGGTGACG GCTTCTTCCC 
    CCCTGGCAGA TGCACCGGCT GCCAACCCGG TGGGAATTCC GCCACCGAGC 
    CTTACATCGC AGCCCATAAC CTTCTCCTTT CACATGCCGC TGCTGTCAGG 
    ACATATCGTG ACAAGTACCA GGCTATTCAG AAGGGGAAGA TTGGCATCCT 
    TCTCGATTTT GTATGGTATG AGCCACTCAC CGACAAAGAA GAGGATCACG 
    CAGCTGCACA TAGAGCCAGG GAGTTTACCC TTGGCTGGTA CCTGCACCCG 
    ATTACATATG GTCATTACCC AGAAACTATG CAGAATGCTG TTAAGGAAAG 
    GCTGCCCAAT TTCACACGTG AGCAGTCTGA GATGATAAAA GGATCAGCGG 
    ATTATATTGC GATCAACCAT TACACAACTT ATTATGTCAG TCACCACGTC 
    AACAAGACAT CCATCAGCTA TCTCAATGAT TGGGATGTGA AAATTTCATA 
    TGAGCGTAAC GGTGTGCCAA TTGGGAAACA GGCGTACTCG AACTGGCTTT 
    ATGTTGTTCC TTGGGGGATC TACAAAGCTG TCATGCATGT CAAGGAGAAG 
    TACAAGGACC CCATTATAAT CATCGGAGAA AATGGCATTG ACCAGCCAGG 
    CAATGAGACC CTACCTGGTG CACTGTATGA CTTCTTCAGG ATACAATATT 
    TTGATCAGTA CCTCCATGAG CTTAAGAGGG CGATCAAGGA TGGTGCAAGG 
    GTCACTGGGT ATTTTGCTTG GTCCCTGCTT GACAACTTCG AGTGGCGGCT 
    CGGGTTCACT TCAAAATTCG GAATCGTCTA TGTAGACCGG AGCACTTTCA 
    CACGGTACCC TAAAGACTCA ACACGTTGGT TCAGGAAGAT GATAAAAAGT 
    GAGGTTTGAG TTGGATTATT ATCACTGTTG GCAGCTGCTG GAGTGCTTTT 
    TTGTTATGCT AGTTTTGGTT GTATGAATAA TAAGATGTCT TGTACTAGTT 
    GAGAACTTCT TCAGATTTTG TACTTCTAGT ATTCTACTTT TTGTACTTCA 
    GATTTTGCAA GCAAGGATGA TTTTAGTTTA ATAGATTCAG GACATCTATA 
    TATACTGGTG ATAAGAGAGG CAGATTTCAA TTTTTGGCTT GAATTGCCCA 
    TATTTGTGTT TTCCAATGTT TTTTAACTTC AAATTTTAAA CTTTGG

    Gene models with high sequence identity

    1. AT3G18080.1 [+] show detail - B-S glucosidase 44
      E-value: 3e-161; Score: 565.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Glycoside hydrolase, family 1 2.9e-17
    FPrintScan Glycoside hydrolase, family 1 2.9e-17
    FPrintScan Glycoside hydrolase, family 1 2.9e-17
    FPrintScan Glycoside hydrolase, family 1 2.9e-17
    FPrintScan Glycoside hydrolase, family 1 2.9e-17
    HMMPanther BETA-GLUCOSIDASE 9.4e-241
    HMMPanther Glycoside hydrolase, family 1 9.4e-241
    Gene3D Glycoside hydrolase, subgroup, catalytic core 5.8e-166
    HMMPfam Glycoside hydrolase, family 1 1.6e-155
    superfamily Glycoside hydrolase, catalytic core 1.3e-167

    See the detailed result >

    AT3G18080.1

    Model type
    Protein coding
    Short Description
    B-S glucosidase 44
    Computational Description
    B-S glucosidase 44 (BGLU44); FUNCTIONS IN: in 6 functions; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cytosolic ribosome, cell wall, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 43 (TAIR:AT3G18070.1); Has 11220 Blast hits to 10898 proteins in 1459 species: Archae - 142; Bacteria - 7700; Metazoa - 714; Fungi - 202; Plants - 1462; Viruses - 0; Other Eukaryotes - 1000 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR