K02828

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02828

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02828

Determination of introduced cDNA(s)

  • J033115J18 - Rice Full-length cDNAs - Original: J033115J18

    full reading [+] show sequence

    Nucleotide sequence: J033115J18 - full reading
    GGTCATCAGT AGAGTAGCAC ACAAACCAAA CCCAATTTTA CCCTAAACCC 
    GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGATCATGG CGGCGGCGGC
    GGCGAGTCTG GTGTCCCTGC CCCTCCTCTC GGCCATCTTC GGCGCCGCCA
    TCGCCCTCCT CTTCCTCTCC GGATACCTCC GCCGCAAGCG CGCCGCCATC
    GCCCATCTCC CCCCTTCCGC CACCGCCGCC GCCCCGGACC AGCCCAAGCA
    AGTTCGACCA TCCAACCAGA ACCAGCCTAA GAAGGGACAC CAGCGATCTC
    ACCACGCCGT CGATAAGGAC GCCGCAAAAA AGCACCATCA TCTTGATGTC
    AACACTTTGA GGGGGCATAC TGATTCAGTC ACAGCACTTC ATTTCTCCGA
    TGATGCCTGC AACCTGGCCA CCGTATGTGC GGATGGAGCT GTCAGAGTAT
    TCAGGGTTGA TGATGTCTCA AGCAAGAGCT TTAAAATTCT GAGGATCAAC
    TTGCCCGCTG GGGCACATCC TACAGCTATT GCTTTCTCAC AAGGGGCATC
    ATCAGTTGTT GTGGCAGCGC AAGCACTTTT AGGCTCATCT CTCTACATGT
    ATGCGGATGT TGGTGCTCCT CCAGCTGGCG GAAACAAACA GCAGGGCAAG
    CTTTCTCCCC CTGAGATAAA GTGGGAACAC CGTAAGATTC ACGGCAAGGA
    GTCAGTGCTG AATCTTGCGG CAGCTCGTGC AACCTATGGG ACTGGTGATG
    GCAGCACAAT ATTGATTTCT TGCTCTGAAG CAACTGATAT CAAAATTTGG
    CATGGGAAAA GTGGAAAGGA GTTGGGAACA GTCGACACCA ATCAATTGAA
    AAATAATATG GCTGATATAT CCCCAAATGG CCGTTTCATA GCTGCTGCAG
    CTTTTACAGC TGATGTCAAG GTGTGGGAGA TTGTTTATTC AAAGGATAGC
    TCTGTGAAGG AGGTCAATAA AGTTATGCAA CTTAAGGGTC ACAAAAGCGC
    TGTTACTTGC CTGTGTTTCG CTCTGAATTC TGAGCAGATT ATTACAGCTT
    CCAAAGATGG TACAATTCGA GTATGGAACA TTAATGTAAG GTACCATCTT
    GATGAAGACC CTAAAACCTT GAGAGTTTTG CCAATTCCTC TCCATGATTC
    AAAAGGTTCT GTTTGCCAGT ATGATCACAT GAGTGTATCT CCTGATGAGA
    AAGTTCTGGC CACGACAAGT GGATCAACGC TGCAATGGTT ATGTGTGGAA
    ACTGGTGCAG TTCTTGATAC AGCTGAGAAA GCACATGAAG GTGATATAAC
    TGGCATTGCC TGGGCTCCAC GAACAATTCC AAATGGTGGA ACTCCTGCTT
    TTGTTTTAGC GACTGCTGGA GTGGACAAAA AGGTGAAGCT GTGGTTAGCT
    CCTAAGGCTA TTTCAACCTG AATGAGTGTG GTTGGATCCT GGTCACCCTC
    TACAGCGCAG ATTCGGTGTG GGCACTGAAG GAAGAGAAAA AAACGATGAA
    AGATAATGCA GATATGTTGC TTGAGTTGAG TCCTTACTGA CGGGAGTCGT
    CAAACATAAC ATGCAGAGAG AGTTTGTGAA GGGGAGACAC TGCACTTTTC
    TCTAAATACA TATCTGTCAA CATTTTGGAA ATAGGTTGCC TGCTGCTCAC
    AATTTTCCCT TTTCTTGTTA GAACAAAAGA AACTAGAGTG GAACTTGGAA
    GTAACTTATC GAGTTCTCTT GCATTCAGTA TGCATATGTT AGTTACTCC

    Gene models with high sequence identity

    1. AT4G00090.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
      E-value: 3e-140; Score: 496.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan WD40 repeat, conserved site 0
    HMMPfam WD40 repeat, subgroup 0.00000016
    HMMPfam WD40 repeat, subgroup 0.000000000068
    HMMPfam WD40 repeat, subgroup 0.000042
    HMMPanther TRANSDUCIN BETA-LIKE 2 PROTEIN 5e-28
    HMMPanther WD40 REPEAT PROTEIN 5e-28
    superfamily WD40 repeat-like-containing domain 4e-37
    HMMSmart WD40 repeat 0.0000063
    HMMSmart WD40 repeat 180
    HMMSmart WD40 repeat 7.3
    HMMSmart WD40 repeat 0.00000000038
    HMMSmart WD40 repeat 0.16
    ProfileScan WD40 repeat 2 10.041
    ProfileScan WD40 repeat 2 15.22
    ProfileScan WD40-repeat-containing domain 9.757
    ProfileScan WD40-repeat-containing domain 17.456
    Gene3D WD40/YVTN repeat-like-containing domain 5.9e-32

    See the detailed result >

    AT4G00090.1

    Model type
    Protein coding
    Short Description
    Transducin/WD40 repeat-like superfamily protein
    Computational Description
    Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: periodic tryptophan protein 2 (TAIR:AT1G15440.2); Has 19942 Blast hits to 11235 proteins in 520 species: Archae - 42; Bacteria - 5638; Metazoa - 5982; Fungi - 4099; Plants - 1742; Viruses - 0; Other Eukaryotes - 2439 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR