K02903

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02903

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • increased size (PATO:0000586)
    (Cauline leaf::Shape::large)
fruit (PO:0009001)
  • increased length (PATO:0000573)
    (Silique::Shape::long)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02903

Determination of introduced cDNA(s)

  • J013049N15 - Rice Full-length cDNAs - Original: J013049N15

    full reading [+] show sequence

    Nucleotide sequence: J013049N15 - full reading 
    TCTCCGTCTC CATCCAACGC CGACGACTCG AGCCTCGACG GCGACGACCC 
    CACACCGGCG GCGGAGATGA ACGCGTTCCG GCTAGCCGGG GACATGACCC 
    ACCTCCTCAG CGTGGTGGTG CTCCTCCTGA AGATCCACAC CATCAAGTCC 
    TGCGCAGGCA TATCTCTAAA GACCCAGGAG CTATATGCAC TTGTGTTTGC 
    TGCTCGTTAC TTGGACCTGT TCATTCATTT TATATCTCTG TATAACACTG 
    TCATGAAGTT GGTCTTTCTG GCAAGTTCTT TCTCAATAGT TTGGTACATG 
    AGGCGGCATA AGATTGTCCG AAGAACCTAT GACAAGGATC ATGACACCTT 
    TCGTCATCAC TTCTTAGTGT TGCCATGTTT GGCTCTGGCC CTCCTTATTA 
    ATGAGAGGTT TACTTTTAGA GAGGTTATGT GGGTATTCTC CATATATTTA 
    GAAGCTGTAG CAATTCTACC TCAACTTGTG TTGCTACAGC GCACGAGGAA 
    TATTGACAAC CTGACTGGCC AATATGTCTT CTTTCTAGGT GCATACCGTG 
    TGCTGTATAT CCTTAACTGG ATCTACCGAT ACTTCACTGA GCCCCATTTC 
    GTTCATTGGA TAAGCTGGGT TGCGGGCATC GTGCAGACTC TCTTGTATGC 
    TGACTTCTTC TACTATTACA TAATGAGCTG GAAGAACAAT GTGAAGCTGG 
    AGCTACCAGC CTGAGCTCAT TTTTCATCCA AGATAGGCTA GGTAAAACTT 
    GTTAAATAGA TAGAAAGGCA TGATACACCA AGGCCACTGC TCCTGGTTAT 
    GATATATGCA TCTTGGTTTC CTGCTCTATC CTCTTGTTTA TTTCTTTTCC 
    TATTTGTCGG ATGAGAGGAA ATCCAAGGGT CACCTTGTAT CTTGTAAGAC 
    AATTAAGCAC AGAGAGATGA GTACCAGGAC GTTCTGAGTT ATGATAGGTT 
    TTGAGACACA ATGGAAATGC TATCTTTTAG TGTACAACGT GGTATGATCC 
    TTCAGCTTGG AAGAATAAAG TATTCTGTGT TCTGTCTTCA TTTTCATAGA 
    AACTGGAGGC TATGCGCAGG GTGTTAATTG C

    Gene models with high sequence identity

    1. AT3G25040.1 [+] show detail - endoplasmic reticulum retention defective 2B
      E-value: 7e-97; Score: 350.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther ER LUMEN PROTEIN RETAINING RECEPTOR 1.2e-173
    HMMPanther ER lumen protein retaining receptor 1.2e-173
    FPrintScan ER lumen protein retaining receptor 9.3e-63
    FPrintScan ER lumen protein retaining receptor 9.3e-63
    FPrintScan ER lumen protein retaining receptor 9.3e-63
    FPrintScan ER lumen protein retaining receptor 9.3e-63
    FPrintScan ER lumen protein retaining receptor 9.3e-63
    FPrintScan ER lumen protein retaining receptor 9.3e-63
    FPrintScan ER lumen protein retaining receptor 9.3e-63
    PatternScan ER lumen protein retaining receptor 0
    PatternScan ER lumen protein retaining receptor 0
    HMMPfam ER lumen protein retaining receptor 1.5e-55

    See the detailed result >

    AT3G25040.1

    Model type
    Protein coding
    Short Description
    endoplasmic reticulum retention defective 2B
    Curator Summary
    Encodes ERD2b. a homolog of the yeast endoplasmic reticulum retention receptor ERD2. Mutations in ERD2b compromise EFR but not FLS2 signaling.
    Computational Description
    endoplasmic reticulum retention defective 2B (ERD2B); FUNCTIONS IN: ER retention sequence binding, receptor activity; INVOLVED IN: defense response signaling pathway, resistance gene-independent, protein transport; LOCATED IN: integral to membrane, Golgi apparatus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ER lumen protein retaining receptor (InterPro:IPR000133); BEST Arabidopsis thaliana protein match is: ER lumen protein retaining receptor family protein (TAIR:AT1G29330.1); Has 912 Blast hits to 910 proteins in 230 species: Archae - 0; Bacteria - 0; Metazoa - 322; Fungi - 187; Plants - 229; Viruses - 0; Other Eukaryotes - 174 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR