K02915

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02915

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02915

Determination of introduced cDNA(s)

J033070K17 - Rice Full-length cDNAs - Original: J033070K17

full reading [+] show sequence

CAAGGCGAGA TCGAGCCTGG AGCGGCTCGC CATCTCTGCC GCCGGTCCGC 
CGCCTCGCTC GCTCGCTCGC CGTCCGCCGC CTCGCTCGCT CGCTCGCCGT 
CCGCCGCCGC CGCCTTGCTC AGTTGCTCGT CGTCCTCCGC CGCCGCGGCG 
CCAGCACGCC TCGTCCTTCC CCTCTCTCGG CTCAGTACTT TGGTTTTCTC 
CCATGTCGAC ATCATTAGCT GAAGCTTCGC AAGGAGGATA TATCAAAGAG 
GTCATTGCAG AGGGCTCTTC GGGAGGCTTA TCATCATCAA CACAATTGTT 
GTCTGCAAAA CGAAAGTTAG CAGCATCGAA TCCTTCGACA GCGAAGCGAA 
GACGATCACC TATTGTATTG CCAATAGTCA GGTCTCCAGG AGTGCGCCAA 
ATTATTTCTC AAAATGCTCT CATCATGGAG AGATCACAAG TTCCTGGTCA 
TATGTCCCCA AGTGCAGAGT CTCCAAGAGC TAGATCTCTG TCTCCAGTGG 
CAAGGTTCGT ATCAAGTCCG TCTACTATCC TTGAGCTGGA TGTTGAAAAT 
CAGCCAAGGG AATCAAGTCA ACCAACACCT CATGTTGTGA CTCATCGTTC 
TGGTTAGCAC CTAATACATT TGTTCTAAAG GACTGGAAAT TTGATCCTGA 
TGTAGCACGT GCAGAACTTT TAAGGATGAT TGTTTTGCAA GAACTTCCTT 
CCAGCTTTGT TGAACACCTT GGTTTTAGAA GATTTTGTGC AAGCTTGAAC 
CCGTACTTTA GGGTGGTTTC TAGAACTACT ATAAAGGGTG ATTGCTTGGC 
TGCCTATCAA GAACAAAAGT TAGCTTTGCT TGAGGTACTG AGGAAAACAA 
ATTCTCGGGT TTCACTGACG GCTGACATGT GGTCATCTAA TCAAAACCTA 
GGTTACATGT GCATAACTTG TCACTTCATT GACAATGAAT GGAATATGCA 
AAAGAGGATC ATAAGATTCA CTCAAGTGCG TACCCCACAT GATAGTATAG 
CTCTCTTCAA TGAAATTATA AAGTGCATTC AAGATTGGCA GATAGAAAGT 
AAGTTGTTCA GTATTACAGT AGACAATGCA TCTACTAATG ATTCTATGGT 
TGTGGAATTG AAAGGAAATC TCTTGGGTAA ACTTGCTATG CCTTGCAAAG 
GAGAGCTATT TCATTTCTGG TGCGCAGCTC ACATCTTTAA TCCTATTGTT 
CAAGATGGAT TGAGTACTAT CAGTGCTGCC ATATCCAGGA TAAGGGAAAG 
TGTGAAGTAT GTAAGAGCAT CAGAAGCACG GGAGCAAAAA TTTGAAGAAA 
TCATTGCACA AGTCGGAATT GTTGAAGAGA AGCGTCCTTC ACTTGATGTC 
TCCACTCGTT GGAATTCCAC CTATTTGATG CTTTCCTCAT CCTTATTATT 
CAGGAGGGCT TTTGATTCAT TGGATCGGTT TGATCCTAAC TTTAAAGATG 
CTCCACAATT TTTCGATTGG GAGAATGCAG AAGTTCTTTG CAAACATCTC 
AAGGTCTTCT ATGATGCAAC TGTTGTGGTT TCCGGGACAT CATATCCCAC 
TGTTACTCGC TACTTTCATG AATTTTGGAA AGTGAAGGTG ATGATTCTAA 
ATGAGTCCAA CAATGAGGAT GATCTTGTTG CTAGCTTGGT TTCTAAAATG 
GATACAAAAT TTCAGAAATA TTGGGATCTA CAGTTCCTGC AGATTTGGGT 
TCCTGTTATT TTTGATCCCA GATTTAAGTT GAAATTCCTT GAGTTTAGGC 
TGAAAGCAGG TTTTGGAGAT AAGGCAACTG GTCCAAATGG ATATCTCCCT 
AGAATTAAGA GGACAGTCCG TACTTGGTTT GCTGAATATT CTTCACAAAT 
TTGTGGTCCA AGCACAACCA ATTCTCAAGA AGCATCAACT AGTGGGGTGA 
ATGTTGGTGG CAGCCAATTT GCTGACTAGA GGCAATATCT TCATGATCAA 
AGCAAGAGTA AAGTAAAGAC TGAGTTAACT AGATATCTCG AAGATATTCC 
TCAAGAAAAT GATTTCCCTG ATGATGATTT TGACATACTC TAGTGGTGGA 
GGGTGAACTC TTGCAAATAT CCAATATCAT CACGCATGGC ACTTGATTTG 
CTTGCTGTCC CTGCATCCTC AGTTGCATCA GAGTCTGCAT TTTCTACTGG 
ATAAAGAATC ATTAGCGACT ATAGGAGTAG GTTGGCTAGT GGAACTGTGG 
AGGCATTGGT TTGCCTTCAA GATTGGATGC GAGCCGATGG TTTTGGTGAT 
CCATATTCAA TTCAAACTGA TACGGCTGAG GGCGATGATG TTAATATGCA 
ACTATTGGGA CATTAAATCA TTTGACATCT CAGGCAAATT ACCATGTGAG 
TTCTATGCAA TCTGGGTTCT GAGAAATTTT GCTAGTTCTG GAGCAGTGGT 
AAGTGGAGCT TGCTTTGTTT CCCAGCTCAT ATCAGTGTTT CCCACGCATG 
TCAGATTACA TCCAAAATTT GTACGATGTA TTGGAAATTT AGTTGAGCCT 
GGGATTTCTG GACTTCTTTT CTGCCGTTGA GCCTGAAATT CATATTTGAT 
TTTGCCTGGT GAATTCTGCA TGAGTGACAG GAATAGATGC AAGGATTAGG 
CGGCTTTGTT GCTGTCAGGA TATGCATGTC TTTTGAGTCC GTTTTTTTTT 
CCCCTTTATG CTGTTGTTAA GCTATGAATA TTTTGGAAGG GGATTTTTTT 
AGAACAATTT GATTAAGGAT CGGTGGATTT TTATGCCAAA TTGTAGACTC 
TGCTTTTCGC TGCAGTCACT GTCTTTCAG

Gene models with high sequence identity

AT3G42170.1 [+] show detail - BED zinc finger ;hAT family dimerisation domain
E-value: 1e-81; Score: 301.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	HAT dimerisation	0.0001
HMMPanther	BED FINGER-RELATED	0.00000041

See the detailed result >

AT3G42170.1

Model type: Protein coding
Short Description: BED zinc finger ;hAT family dimerisation domain
Curator Summary: transposase-like gene with conserved domains from the family of hAT transposases that includes hobo from Drosophila melanogaster, Activator (Ac) from maize, and Tam3 from snapdragon but lacks several amino acids known to be essential for Ac transposition5. The DAYSLEEPER gene lacks 8 bp duplications and TIRs (a common feature of transcriptionally silent hAT transposases), however, DAYSLEEPER expression was detected, and several expressed sequence tags are available. The expression seems to be under the control of factors determining the circadian rhythm. DAYSLEEPER was isolated as a factor binding to a motif (Kubox1) present in the upstream region of the Arabidopsis DNA repair gene Ku70. Mutant plants lacking DAYSLEEPER or strongly overexpressing this gene do not develop in a normal manner.
Computational Description: BED zinc finger ;hAT family dimerisation domain; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656); BEST Arabidopsis thaliana protein match is: BED zinc finger ;hAT family dimerisation domain (TAIR:AT1G18560.1); Has 1233 Blast hits to 1128 proteins in 97 species: Archae - 0; Bacteria - 4; Metazoa - 232; Fungi - 219; Plants - 755; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
Link: InterPro Scan - TAIR