K02931

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02931

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02931

Determination of introduced cDNA(s)

  • J013155D03 - Rice Full-length cDNAs - Original: J013155D03

    full reading [+] show sequence

    Nucleotide sequence: J013155D03 - full reading 
    GATCGAACTC AACAAGCCAA CCAAGAAGAG GAGAGGAGAA GAGAGGAGTC 
    AAGAAACGCA AAAGGTTATC AACAGTAAGT ACTCATTGAA GTATCACTTC 
    TTCAGGAGTA GTATGGGTAT TGAAATTGTA CCTCAATCCT TCAATGAGGA 
    GCTGGATTCT ACTGTTACTA TCACTCCTGC TAGTGACAAC ATAGATGTGT 
    CTGATGATAC AAGTGTTCCT CATCCATCAG AAGTGCCTGC CACAGTAAAT 
    GTTGTTCTAG TTGAGCAATC TGATAATTCA ATCTCTGAAC CTTTGGAATC 
    TGATGGAGCC AATGGAGCTA CAGAAAATGT TGTTCCCTTG GCAAGTGAGA 
    AGTCTACTGA CAACAATGAT GCTATGAATT CAGAGCCAGT GAATTCAGAA 
    CCATATGAAG CATCTCCTGC TAATAATGCT GAAAAGGGAG ATGTGATGCA 
    GCAGAGTGAT GAGAACAATG GTGATAAACA GGAAAATCAG GATCTGTTGT 
    CTCCAATGGC AGAAACAGCA GGAAGTGACA GTACCTCAGT CACATCGATG 
    GAAGATGTTC AAGAAGCAAA GGATGCTGCT CCATCAGAGA CAGATGATGC 
    TACTGGCCAC CCTCCTGATC TGTCAAATGA CAAAGCTTGT GCTGGAAATG 
    GAAATGGAAA TGTCTTCCAA AATGCAAAGT GTGTCTTGAC AACTTCGACA 
    AAGAAGATGA AGAGAAGTGC ATCTGCAACT ACAAGGAAGT CACTGCAAGC 
    TACTAATACT GACGAAGGGA ATGCTTCTAC TCTCACCAAC TCGAAATCAT 
    CAAATGGAAG GACCACAACA GTTCCAGCAG GCCCAGTTTT CAGATGTACT 
    GAACGTGCCG AGAAGCGCAG AGAATTTTAC ATGAAGTTGG AGGAGAAGCA 
    CCAAGCTTTG GAGGAAGAGA AGATTCAGTT GGAGGCAAAA TTGAAGAAAG 
    AACAAGAGGA AGCACTGAAG CTGCTGAGGA AGAGCCTGAC GTTCAAGGCC 
    ACACCAATGC CAAGCTTCTA CCACGAGGCT CCTTCTCCCA AGGCTGAATA 
    CAAGAAGCTG CCGACGACGC GGCCCAAGTC GCCAAAGCTG GGGAGGAGGA 
    AGGCCTCGAC GGCGGCGGAC GCCTCCAACT CGTCGGAGGA GAGCGACAGC 
    ACGCCGCGGC CGTGCTGCCG CGCCAGCCGC GACAGCCTCG ACAGCATCTG 
    CAAATGCAGC AGCAGCAGCA GAAACGGCAA GCCGCAGCAA CCTGCAACCG 
    CGAAGCCGGC AGCCTCCAAG AAGCAGCCCA AGCCACACGC CCACAAGCTC 
    TCCGACCAGA GCGCCATGAA CATCGCCGTC CACTAGCTGC TTCTCTCTCT 
    GTCTCTCTCT TTCTTGCTTG GCTGCATGGA TCAATCATGG AGGAAGGAAC 
    CAACCACCCA ATTCAGGAGG AAAAAGAATC GAGTTCTTGT TTTTTTTCTT 
    CTTCTTCTTC TCTAAGTAAT TATTGGGAGT GATATGATGG GCTTCTGCAA 
    TCTTCAATCA TGTGGTATTG GTGTAGATAA TAAGTTATGA TGATGATGAT 
    GCACAAGAGG GTTTGTGTGA GACTGCCTGC CATGGGTGAA GTTCAGAAGT 
    GATGTTTTAT TTTTAATTTA TGCTGATTTT CACTTTGTTT ATTTTGGGGA 
    TGTGAGAATG GCATGTGTCA GTCATAACTT CTTTTTCTTA ATTTATGTGA 
    TGTGGGTGTT CTTGATGTAA TTTATGTATT TATATATAAT GTATATACTC 
    ACAATGCAAA CAGAAGGCTT TGTTGTTGGT GGTG

    Gene models with high sequence identity

    1. AT2G35880.1 [+] show detail - TPX2 (targeting protein for Xklp2) protein family
      E-value: 4e-24; Score: 110.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Xklp2 targeting protein 1.5e-20
    Coil coiled-coil 0

    See the detailed result >

    AT2G35880.1

    Model type
    Protein coding
    Short Description
    TPX2 (targeting protein for Xklp2) protein family
    Computational Description
    TPX2 (targeting protein for Xklp2) protein family; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xklp2 targeting protein (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: TPX2 (targeting protein for Xklp2) protein family (TAIR:AT4G32330.3); Has 16554 Blast hits to 10282 proteins in 807 species: Archae - 18; Bacteria - 1410; Metazoa - 6904; Fungi - 1967; Plants - 895; Viruses - 63; Other Eukaryotes - 5297 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR