K02933

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02933

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02933

Determination of introduced cDNA(s)

  • J033086L20 - Rice Full-length cDNAs - Original: J033086L20

    full reading [+] show sequence

    Nucleotide sequence: J033086L20 - full reading 
    GATGTCCGTT CCATCCTAGT CCTTGGCAAG TCTTCTCAAG CAGGAGGAGG 
    ACTTGCCATG GTGTTGATTT GGGGCGGGAA GAAGCATCGG GCTCGCCGTC 
    TGCTCCTCTG ATCGGCCTCC TCAGTTGACA CAGCAAGATT TGGTCCGGGG 
    GGAAGGGGAG CAGCCGCCAT GTTTGGGTCC CGAGTCCAGG ATGAGGTGGA 
    GATGCAGAGG AGGACTACCA ACAGGATCTT TCCTGATGAG AGACAGGACC 
    AGTTTAAGCT ACCGTTTCAA GCTGCACGGG CTGACAGATT TGGGGTAAAC 
    AGGATAGATG CAAAGACTAC TGAGAAGATT AAAGTGATAA GTGAAGGCAA 
    CATACCATGG CACCGCCGCA TTCTAGACCC TGGGAGTAGC ATGGTGATAA 
    TGTGGAACAG GGTGTTCCTA GGGTCCTGTT TGTTTGCTCT TTTCATTGAT 
    CCTTTCTTCT ACTACCTGCC GCTAGTTCAT GTACTAGATG AAAGTACCAA 
    CCGTTCATGC ATTGCCAAGG ACCGGCGATT GAGCATAACT ATCACTGTTC 
    TTAGGACATT TGCGGACTTG TTTTACATGC TGAACATCAT GGTCAAGTTC 
    CATACTGCAT ATGTAGATCC AAAGTCCAGA GTACTTGGGA AGGGAGAGCT 
    TGTCTTGGAC TTAAAGAAGA TTCAACGGAG ATATCTCAGA ACAGATTTCT 
    TTATTGACCT ACTTGCAACG ATCCCTCTTC CTCAGGTTAC CGTGTGGATT 
    ATTATGCCTT CAATAAAAAA CTCAGATTAC AACATCCGGA ACACCACATT 
    TGCTCTGGTT ATTATGATTC AGTATATATT CAGAATGTAT CTCATTGTAC 
    CATTAAGCAA TCAAATTATC AAAGCAGCTG GAGTAGTTGC CAAGTCAGCC 
    TGGCTAGGAG CAGCATACAA TCTTCTGTAC TACATGCTTG CAAGTCATAT 
    TACTGGAGCA ATATACTATC TTCTCTCCAT TGAACGGCAA ATTACATGTT 
    GGAATCAGCA GTGCCTAAAT GAGTCTTGTA GTTTTAACTT CATAAGCTGT 
    GACAATACTG GTTCTAGCAG TTATCTTACT TGGGGAAAGA ACACAAGTAT 
    ATTTGACAAT TGTGATCCCA ATCGTAATTC AAGTGCTAAC CCCCCACCAT 
    TTAATTATGG AATGTTTTCA ACCGCACTGA GTAAAGGTGC TGTTTCTGCT 
    CCATTTCTTG AGAAGTACTT CTTTTGTCTG TGGTGGGGCT TGCTGCAGCT 
    TAGTTCTAGT GGAAATCCTC TTCAGACAAG TGCATACATC GCAGAGAACA 
    CATTTGCCAT AGCAATTGGT GCTCTTAGTC TCGTACTCTT TGCTCAGCTG 
    ATTGGCAATA TGCAGACATA CTTGCAGTCC ATCAGTAAAA GGCTTGAAGA 
    GTGGAGGCTC CGGCAAAGAG ATATGGAGGA GTGGATGAGA CATCATCAGC 
    TCCCTGATGA ACTTCAAGAT CGTGTCCGGC GATTCGTTCA GGTTAAATGG 
    CTTGCAACAC GAGGAGTAGA AGAGGAATCC ATCTTACAAG CTTTGCCTGC 
    TGATATACGC CGGGATGTAC AGCGCCATCT TTGTTTGGAC CTTGTTCGAC 
    GTGTCCCATT TTTCTCGGAG ATGGATTACC AACTTCTAGA CGCCATCTGC 
    GAGCGTCTGG TGTCTTTCCT GTGCCCTGAG CGCACATACA TTTCTCGTGA 
    GGGTGATCCT GTGAATGAGA TGCTCTTCGT CATACGCGGT AAGCTAGAGA 
    GCTCCACAAC CAACGGAGGC CGCAGCAACT TCTTCAACTC CATCATCCTG 
    CGCCCTGGTG ATTTCGCTGG CGAGGAGCTG CTCACATGGG CTTTACTTCC 
    AAAGACCAAT GTCCATTTCC CGCTTTCGAC GAGGACAGTG CAGAGCCTTA 
    CAGAGGTTGA GGCCTTTGCC CTGAGAGCCG AGGACCTCAA GTTCGTCGCG 
    AACCAGTTCA GAAGACTACA CAGCAAGAAG CTCCAGCACA CGTTCCGGTT 
    CTACTCCCAC CATTGGAGGA CATGGGCTGC CTGCTTCATC CAGGCTGCTT 
    GGCGGCAGCA CCAGAGGAGA AAGCTGGCAG AGAGCCTGAG CCGGTGGGAA 
    TCATACTCAT GGTGGCCAGA AGAACATCCA CCAGCTGACA AGCCTAAACA 
    GGAGGGCACT TCAAGCAGTA CCAAGACTAT TGCTGAGAGT GCCATTGCTC 
    AAATGCACAA GTTCGCCTCC GCTTCCAGAA GGTTCCGTGC CGACGATACC 
    GCCATCCGGA GGCTGCAGAA GCCTGATGAG CCTGACTTCT CTGCAGATCA 
    TTTCGATTGA GGCTGATGTT TCCTGCTTTT AAAAAACTGT TGTAAAACCA 
    CTACTGTGCA CTGCATTGTA TTCAATAGCC ATATAGTAAT CCATGTGTAT 
    CTCAAAGATG AAACCAAACT GGTCCTTTGT GTAATTCAAA TATACGCATT 
    TTAGGAGC

    Gene models with high sequence identity

    1. AT4G30360.1 [+] show detail - cyclic nucleotide-gated channel 17
      E-value: 0; Score: 742.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Cyclic nucleotide-binding 8e-09
    HMMPanther CYCLIC NUCLEOTIDE GATED CHANNEL, PLANT 1.7e-272
    HMMPanther VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL 1.7e-272
    HMMPfam Cyclic nucleotide-binding 4e-09
    HMMPfam Protein of unknown function DUF2091, periplasmic 8.9e-05
    Gene3D RmlC-like jelly roll fold 2.2e-18
    superfamily Cyclic nucleotide-binding-like 4.2e-36
    superfamily Voltage-gated potassium channels 2.1e-22
    ProfileScan Cyclic nucleotide-binding 9.031

    See the detailed result >

    AT4G30360.1

    Model type
    Protein coding
    Short Description
    cyclic nucleotide-gated channel 17
    Curator Summary
    member of Cyclic nucleotide gated channel family
    Computational Description
    cyclic nucleotide-gated channel 17 (CNGC17); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: potassium ion transport, ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: cyclic nucleotide-gated channel 14 (TAIR:AT2G24610.1); Has 3400 Blast hits to 3264 proteins in 232 species: Archae - 0; Bacteria - 47; Metazoa - 1584; Fungi - 2; Plants - 959; Viruses - 0; Other Eukaryotes - 808 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR