K02934

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02934

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02934

Determination of introduced cDNA(s)

  • J033135D24 - Rice Full-length cDNAs - Original: J033135D24

    full reading [+] show sequence

    Nucleotide sequence: J033135D24 - full reading 
    GACATGGGTT TGCACATGGC ACATGAACAC AAAGCTCCGG TCAAAAAGGA 
    GCTGAAAGAA ATTGTCTAAA ACTGCGCTTT CAATTCAAGG CTGGCAAAAT 
    CCTCAAACCA CGCGCTTATC TCTGGAATCT GGGAGGATTT AGAGCTAATT 
    TTTCCGCATC CATGAATTCG AGACACACTT TGACTTTTGG CTTTTGGCTT 
    TGACTTTGGC TTCTTCTCCT CCATTTCATC GCTCGTTCTC TCCATCCACC 
    GCTTTGATTA GTCGGGATCT GGACAGCATC GGCGAATCAT CCGCCTCCGC 
    CTCCGCCTCC GCCTCCGCCG ATCCCCCATC CATCCCGCGA GCGCCGCCGT 
    CGTTGCTTCC GCCGCATCCT GATGGAGGAG GATCAATCAG CCACGTATAG 
    CGTCGATGAC GCGCTTCTGT CATCAGGTTT TGGGAGGTAC CAAATATTGA 
    TTCTTTCATA TGCCGGGGTC GGCTTGATTG CAGAAGCAAT GGAGATGATG 
    CTACTATCAT TTGTTGGTCC ATCAGTACAG TTAGAATGGA AGCTTACTTC 
    ACATCAGGAA AGCATGATTA CAAGCATTGT TTTTGTTGGA ATGCTAATAG 
    GAGCTTACAC TTGGGGTGTA GTTTCAGACA ACTACGGAAG GAGGCAGGAG 
    AGGATTTCTC TTTACCGCCA TCGTGACTAG TGGAGCTGGA TTCCTCAGTG 
    CTTTTGCACC TAACTATGTG TCACTAATTT CTCTAAGATT TCTAGTTGGT 
    ATTGGATTGG GAGGGGGACC TGTCCTTGCA TCTTGGTTCT TGGAATTTGT 
    TCCTGCTCCA ACTAGAGGAA CTTGGATGGT AGTATTTTCT GCCTTTTGGA 
    CTGTTGGGAC CATCTTCGAG GCTTCTCTTG CTTGGACAGT AATGCCCAAA 
    TTTGGCTGGA GGTGGTTGCT AGCATTATCT GCTGTCCCAT CTTTCGTCCT 
    GCTTTTATTT TATGTTATTA CACCAGAGTC ACCAAGGTTC CTATGCATGA 
    AAGGCAGAGT AACAGAAGCC ATGGATGTAC TGGAGAAAAT GGCTAGATTG 
    AACAATGTAC AGCTCCCCTC TGGAAGGCTT GTATCTGACA AAAACATTGA 
    GCTAGATGAA CTTTCAGCAT CTGAGTCTAC AACACTTCTT GCTGATGCTG 
    AAGAAGATGA CACCATCATT GAAGACAAAG TTTCCAGTTT TGGAGGTTTG 
    TCCGTCGCGA AGCTGCTGTC GCCAAAATTG ATACGTGCAA CTCTGCTCCT 
    GTGGATGACT TTCTTTGGAA ATGCATTTTC CTATTATGGA ATTGTTCTGC 
    TCACATCGGA GTTAAGTAAC GGTAATAGGA TATGTGCAAA AGAGGAGGTT 
    GAATCCATAC ACTCAAATGA TGCAAGCTTA TACAAAAACG TTTTTATATC 
    TAGCTTTGCA GAGATTCCAG GATCATTTTT GTCAGCCATG ATTGTGGATA 
    GGATTGGTAG AAAGCTGTCA ATGGCATCAA TGCTCTTCAC AAGCTGTGTT 
    TTCTTATTCC CACTAATTTT CTCCCGAACG GATATACTAA CAAGAGTCTC 
    CCTATTTGGA GCCCGGCTTT GCATATCTGC TAGCTTTACA ATTGTATACA 
    TATATGCTCC AGAGATTTAC CCAACCTCTG TCAGAACAAC CGGAATTGGC 
    GTGGCGAGCT CTGTAGGTAG GATTGGAGGC ATCCTCTGTC CTCTCGTCGC 
    TGTTGCTCTA GTACACAGCT GCCAGCAGAC GACAGCGATC CTTCTCTTTG 
    AGCTTGTAAT CTTCCTCTCC GGGTTGGCTG TCTCATTTTT CCCTTTTGAG 
    ACAAAAGGCT GTAGACTTAA CGACACCGAA GTCGTTATGA ATTGATGAGG 
    TGATTGTATT GTCATACCAT TTTTTCTGTG CTGAGTACGA AGTTCCCCTG 
    TTAATTGAAC ATTTCCAGCA ATGTGCTAAG GGTGATATTG TTCAGTCTTC 
    GG

    Gene models with high sequence identity

    1. AT3G13050.1 [+] show detail - Major facilitator superfamily protein
      E-value: 2e-161; Score: 125.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Major facilitator superfamily, general substrate transporter 1.7e-55
    superfamily Major facilitator superfamily, general substrate transporter 3.3e-13
    PatternScan Sugar transporter, conserved site 0
    HMMPanther SUGAR TRANSPORTER 7.6e-31
    HMMPanther SUGAR TRANSPORTER 7.6e-31
    HMMPanther SUGAR TRANSPORTER 2.4e-134
    HMMPanther SUGAR TRANSPORTER 2.4e-134
    ProfileScan MFS 30.008
    ProfileScan MFS 11.93
    HMMPfam General substrate transporter 1.8e-33
    HMMPfam General substrate transporter 0.00016

    See the detailed result >

    AT3G13050.1

    Model type
    Protein coding
    Short Description
    Major facilitator superfamily protein
    Computational Description
    Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: organic cation/carnitine transporter4 (TAIR:AT3G20660.1); Has 38439 Blast hits to 37687 proteins in 2363 species: Archae - 738; Bacteria - 22281; Metazoa - 5017; Fungi - 6515; Plants - 2234; Viruses - 0; Other Eukaryotes - 1654 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR