K02935

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02935

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1 rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02935

Determination of introduced cDNA(s)

  • J033089L09 - Rice Full-length cDNAs - Original: J033089L09

    full reading [+] show sequence

    Nucleotide sequence: J033089L09 - full reading 
    GGCTCTTTCC TTTCCCCGAA TGTTAATCTT CAGGAGCTAG CTGCACGGAC 
    AAAGAACTAC AGTGGAGCAG AGCTGGAAGG TGTCGTCAAA AGTGCAGTCT 
    CATATGCTTT GAACAGGCAG ATAAGCATGG ATGACCTTAC CAAGCCTTTG 
    GATGAAGAAA GCATTAAGGT TACTATGGAT GATTTTGTGA ATGCACTTCA 
    TGAAATTACC CCTGCATTTG GTGCTTCCAC TGATGACCTT GAAAGATGCA 
    GGCTAAGGGG TATGGTTGAT TGTGGCAAGG CACATAGGCA CTTGTATGAG 
    AGAGGTATGC TTCTTGTTGA GCAAGTTAAA GTTAGCAAAG GTAGTCCACT 
    TGTGACATGC CTCTTGGAAG GTCCTGCTGG AAGTGGTAAA TCGGCTTTGG 
    CTGCTACTGT TGGCATTGAC AGTGATTTTG CTTACGTCAA AATTATATCA 
    GCAGAGACAA TGATTGGTTT CAGTGAAAGC AGCAAATGTG CACAGATTTG 
    CAAGGTTTTT GAGGATGCAT ACAAATCTCA GTTTGGCATC ATAATTCTAG 
    ATGACATCGA AAGGTTACTG GAATATGTTG CCATTGGACC ACGCTTTTCA 
    AACATAATCT CACAAACTCT ACTAGTCCTT CTCAAGAGGG TTCCTCCTAA 
    GGGCAAGAAC TTGCTTGTTA TTGGAACAAC AAGTGAAGTA GGCTTTCTAG 
    AATCCATTGG TATGTGCGAC GTGTTCTCCG TGACATACCA TGTCCCCAAA 
    CTGAAAAAGG AGGATGCTAC AAAGGTGTTG CGGCATCTCA ATGTGTTCGA 
    TGAAGCGGAC ATTGATGCGG CTGCAGAAGC ACTGGACGAT ATGCCAATCA 
    AGAAGCTGTA CACACTCGTT GAGATGGCTG CACAAGGGCC ATCAGGAGGA 
    AGCGCGGAAG CAGTCTATGG TGGAGAGGAA AAGATAGATA TCAACCACTT 
    CTTTAGCATC TTGAGTGATA TTATCCGCTA TTAACTACAC GGCGTCGGAA 
    TGAACCCTAG GTGACACCAT AGGAATTTAA TTGCACATTT CTTCTTACTT 
    CAAGTTCTCC CTTTTGCCAC CGTCGCCAGG GTATAGGGTT GTTTGATCTT 
    TGAGGTTCGT GTCTCCTTGT TGTGCCGCTT TGAGCTTTTG TTGGAATGTT 
    GTTATGATTC GGACAGAGGT TATACCTTAC ACGATGTAGC ATGTTTCAAC 
    CGTATGTTTC GATACTTTCC CAGCACAGAG TTGCACG

    Gene models with high sequence identity

    1. AT4G04910.1 [+] show detail - AAA-type ATPase family protein
      E-value: 1e-128; Score: 456.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 3.3e-08
    Gene3D no description 7e-37
    HMMSmart ATPase, AAA+ type, core 6.2e-07
    HMMPfam ATPase, AAA-type, core 3.1e-10
    superfamily P-loop containing nucleoside triphosphate hyd 8.6e-32
    superfamily P-loop containing nucleoside triphosphate hyd 1.1e-06
    HMMPanther VESICULAR-FUSION PROTEIN NSF 1.5e-147

    See the detailed result >

    AT4G04910.1

    Model type
    Protein coding
    Short Description
    AAA-type ATPase family protein
    Curator Summary
    N-ethylmaleimide sensitive factor
    Computational Description
    N-ethylmaleimide sensitive factor (NSF); FUNCTIONS IN: protein binding; LOCATED IN: vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30539 Blast hits to 27448 proteins in 3106 species: Archae - 1540; Bacteria - 10808; Metazoa - 4854; Fungi - 3637; Plants - 2891; Viruses - 27; Other Eukaryotes - 6782 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR