K02944

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02944

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02944

Determination of introduced cDNA(s)

J013122G04 - Rice Full-length cDNAs - Original: J013122G04

full reading [+] show sequence

ACATTAAGGT TCAAGGTATT ATTGGACCAT GCACATCTTT GGAAAAGAAA 
GGAGCTCTAT GTGCCGACAC AGTTGTTGGT CAAGGAAATA CAACAGCATG 
GAAAATGTGT GGTCTTGACA GGAATACTTC ATTAACAGTA TTTTTTGATG 
TCTCACCGAG TGAGCGGTCA AGCCAACCAG GACATCAGAA TCCCGATCTG 
TATATACAAT TTGTAACAAG TTACCAACAC CCAGAAGGTC AAATGAGGAT 
TAGAGTTACT ACCATATGCA GAAAATGGGT GGATGGATCT ACCAACACAG 
AGGAATTAGT CGAGGGTTTT GACCAGGAAA CTGCAGCTGT TGTGTTGGCG 
AGATACATCT CGTTGAAAAT GGAAATGGAG GAAGAGTTCG ATGCAACACG 
GTGGCTTGAT AGATCCCTCA TACGGCTTTG TTCAAGATTT GGGGATTATC 
GGAAGGATGA TCCATCTTCA TTTAGCTTGC ATTCAAATTT CTCTTTGTTT 
CCTCAGTTTA TGTTTAATCT ACGGCGTTCA CAATTTGTTC AGGTTTTCAA 
TAACAGTCCA GATGAGACAG CTTATTTCCG GATGTTACTC AACCGTGAGA 
GTATCACTAA CTCAGTTGCC ATGATTCAAC CATCATTAAT TTCATTCTCT 
TTTGATTTGC CTCCATCTCC TGTATTCCTC GATGTGGCAT CAATAGCAGC 
AGATCGTATA CTGCTACTTG ATGCATACTT CAGTGTTGTC ATCTTCCATG 
GTATGACAAT TGCTCAGTGG AGAAACATGG GTTACCAGAA TCAACCTGAG 
CATCAGCAAT TTGCACAATT GTTGCAAGCT CCTCACGAGG AGGCTCAAAT 
AATAATTAAA GGACGATTTC CTGCTCCAAG ACTAGTTGTC TGTGACCAAC 
ATGGCTCACA GGCAAGGTTC TTGTTGGCAA AGCTGAACCC ATCGGCTACA 
TATAACTCAG CACATGATGT TCCTCCAGGT TCTGACATCA TATTCACGGA 
TGATGTTAGT TTCCAGGTCT TCTGTGAGCA TCTTCAAAGG CTGGCCGTTC 
AGTCCTAAGG ACATGTATGC AAAGTTGTAC ACCGTATCTG ATAGCTATAT 
TTACTGAGTT TGGTAGGTCT GAGTTGTGGG AGATTTCTGC TTTCCCTTTT 
TTTGACCTCA TGTGTTCTTA TTACATCGTG TCAGGTTTTC CGACATCAGA 
CAATTTTTTC GGGAAATAAT CTTGAAAGCA TGTATAAGTT GTCCCCATAA 
TATTATTTAT CCATCATATA TACTTCTTTA TATTGACCTC ACTGTCATCT 
TAAGGTGTAT AGACAAGTAA GATTTTTGTG GT

Gene models with high sequence identity

AT3G23660.1 [+] show detail - Sec23/Sec24 protein transport family protein
E-value: 1e-150; Score: 529.00

InterPro Scan Digest

Program	Description	E-value
superfamily	SSF81995	3.3e-38
superfamily	SSF82754	3e-56
HMMPanther	PTHR11141	0
HMMPfam	Sec23/Sec24, helical domain	1.1e-27
superfamily	Sec23/Sec24, helical domain	4.6e-48
HMMPfam	Sec23/Sec24 beta-sandwich	1.9e-24
HMMPfam	Gelsolin domain	0.000000000049

See the detailed result >

AT3G23660.1

Model type: Protein coding
Short Description: Sec23/Sec24 protein transport family protein
Computational Description: Sec23/Sec24 protein transport family protein; FUNCTIONS IN: transporter activity, zinc ion binding; INVOLVED IN: intracellular protein transport, transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24, helical domain (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24, trunk domain (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: Sec23/Sec24 protein transport family protein (TAIR:AT4G14160.2); Has 1418 Blast hits to 1403 proteins in 244 species: Archae - 0; Bacteria - 0; Metazoa - 517; Fungi - 392; Plants - 312; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink).
Link: InterPro Scan - TAIR