K02948

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	rosette leaf (PO:0000014)	decreased width (PATO:0000599) (Rosette leaf::Shape::narrow) epinastic (PATO:0000945) (Rosette leaf::Shape::epinastic) dark green (PATO:0001249) (Rosette leaf::Color::dark) present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many)
	fruit (PO:0009001)	decreased length (PATO:0000574) (Silique::Shape::short)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin)
T2	seed (PO:0009010)	increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02948

Determination of introduced cDNA(s)

J023083L04 - Rice Full-length cDNAs - Original: J023083L04

full reading [+] show sequence

GAAAGGAAAA GAGAGAGCCC TCCTCTCCTC TCCTACCCTC TTCTTCCTCC 
TCCTCCTCCT CGCCTCCCAC CAAACCCTAG CACGAGCAGC CCAATCCATC 
TCCAGCCTCA CGAGCTCCAG TTCGGAGCAG CCTCGCGGTG GGACGAGTCG 
CCAGTTGGGG AGCTCGGAGG AGGTGAGGCC GTGGTTGGGG GTTGGGAAGG 
GGGGAAGGCC AAGAAATGGC GGAGAAGGAG GAGGGCAAGG TGGCGGCGGA 
GGGTGGGGCG GAGGCGGAGG CCGACGAGGA GGTGGAGGTC AAGTTCCGCC 
TCTTCGACGG CTCCGACATC GGGCCCCTCC GCTGCAACGC CGTCGCCACC 
ACCGTCGCCG CCCTCAAGGA CCGCGTCGTC GCCGACTGGC CCAAAGATAA 
AACAATTGTC CCGAAGACTG CTAATGATGT CAAACTGATA AGTGGAGGAA 
AAATTCTAGA AAACGACAAG AACATTGCGC AGTGCAGAGC ACCTTTTGGT 
GATCTTCCGA GCACTGCTAT CACAATGCAC GTTGTTGTGC AGCCATCATC 
AGCCAAATCA AAACCTGACA AGAAGACCAA CAAGTTGCCA AAGACCACTC 
GCTGCTCATG TACCATACTA TGAAGGTTCA GTGTCAACTC CATCGACAAT 
AATTTGTATG TCCGTGAAAA TTATGCAGAG AGACAACGAA TGGAGAGAAG 
ATTGAAGAAA ATCTGGTGCC AGAGGAGTCC GATGTGTTGT GAGATTGTAT 
TGTAATTGTA AGCTTAGATA CTACAGAGAG TTCGTCCCTC TGCGGCTAGG 
GAAAAATAGA TGTCGTTCGG TCGGTTGCTT GTCTGTTTTA CCCAACAAAA 
TGTTTCTATA TGATGTACAA TATACACATA CATGCTGTTC TGGAGGAAGA 
AGTTGGTTGT TTTTCCGTGC C

Gene models with high sequence identity

AT4G24990.1 [+] show detail - Ubiquitin family protein
E-value: 4e-35; Score: 145.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	no description	7.9e-41
HMMPfam	Glycine rich protein	2.7e-06
superfamily	Ubiquitin-like	8.7e-22

See the detailed result >

AT4G24990.1

Model type: Protein coding
Short Description: Ubiquitin family protein
Curator Summary: geranylgeranylated protein ATGP4
Computational Description: ATGP4; FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Membrane-anchored ubiquitin-fold protein, HCG-1 (InterPro:IPR017000), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: membrane-anchored ubiquitin-fold protein 4 precursor (TAIR:AT3G26980.1); Has 159 Blast hits to 159 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 157; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR