K02948

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02948

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased width (PATO:0000599)
    (Rosette leaf::Shape::narrow)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02948

Determination of introduced cDNA(s)

  • J023083L04 - Rice Full-length cDNAs - Original: J023083L04

    full reading [+] show sequence

    Nucleotide sequence: J023083L04 - full reading
    GAAAGGAAAA GAGAGAGCCC TCCTCTCCTC TCCTACCCTC TTCTTCCTCC 
    TCCTCCTCCT CGCCTCCCAC CAAACCCTAG CACGAGCAGC CCAATCCATC
    TCCAGCCTCA CGAGCTCCAG TTCGGAGCAG CCTCGCGGTG GGACGAGTCG
    CCAGTTGGGG AGCTCGGAGG AGGTGAGGCC GTGGTTGGGG GTTGGGAAGG
    GGGGAAGGCC AAGAAATGGC GGAGAAGGAG GAGGGCAAGG TGGCGGCGGA
    GGGTGGGGCG GAGGCGGAGG CCGACGAGGA GGTGGAGGTC AAGTTCCGCC
    TCTTCGACGG CTCCGACATC GGGCCCCTCC GCTGCAACGC CGTCGCCACC
    ACCGTCGCCG CCCTCAAGGA CCGCGTCGTC GCCGACTGGC CCAAAGATAA
    AACAATTGTC CCGAAGACTG CTAATGATGT CAAACTGATA AGTGGAGGAA
    AAATTCTAGA AAACGACAAG AACATTGCGC AGTGCAGAGC ACCTTTTGGT
    GATCTTCCGA GCACTGCTAT CACAATGCAC GTTGTTGTGC AGCCATCATC
    AGCCAAATCA AAACCTGACA AGAAGACCAA CAAGTTGCCA AAGACCACTC
    GCTGCTCATG TACCATACTA TGAAGGTTCA GTGTCAACTC CATCGACAAT
    AATTTGTATG TCCGTGAAAA TTATGCAGAG AGACAACGAA TGGAGAGAAG
    ATTGAAGAAA ATCTGGTGCC AGAGGAGTCC GATGTGTTGT GAGATTGTAT
    TGTAATTGTA AGCTTAGATA CTACAGAGAG TTCGTCCCTC TGCGGCTAGG
    GAAAAATAGA TGTCGTTCGG TCGGTTGCTT GTCTGTTTTA CCCAACAAAA
    TGTTTCTATA TGATGTACAA TATACACATA CATGCTGTTC TGGAGGAAGA
    AGTTGGTTGT TTTTCCGTGC C

    Gene models with high sequence identity

    1. AT4G24990.1 [+] show detail - Ubiquitin family protein
      E-value: 4e-35; Score: 145.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 7.9e-41
    HMMPfam Glycine rich protein 2.7e-06
    superfamily Ubiquitin-like 8.7e-22

    See the detailed result >

    AT4G24990.1

    Model type
    Protein coding
    Short Description
    Ubiquitin family protein
    Curator Summary
    geranylgeranylated protein ATGP4
    Computational Description
    ATGP4; FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Membrane-anchored ubiquitin-fold protein, HCG-1 (InterPro:IPR017000), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: membrane-anchored ubiquitin-fold protein 4 precursor (TAIR:AT3G26980.1); Has 159 Blast hits to 159 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 157; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR