K03009

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03009

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K03009

Determination of introduced cDNA(s)

J023130L12 - Rice Full-length cDNAs - Original: J023130L12

full reading [+] show sequence

GACGCTTGCG GCCACGCGCG ATGCGACGCG ACCCGACTTT TTCCCCCCTG 
CGCGTACGCG TGATGGCGCG TGAGGACGGA GAAGATGAGA CGGGAGGAGG 
AGGAGGAAGA GAAGGGGCCC ATCCATTCCA TCGCCCGACG CGGCCCGCTG 
CGGAGAAGAG GAGATCGGAT TGTACTCTAC ATGATAAGAA AGTATGGCAC 
CAGCAAACAA AGCAGAGAGA AAAGCAGTGC TGGATGCTGG AGCATGGATG 
TTCAACGTTG TGACATCAGT TGGTATCATC ATGGTCAACA AGGCATTAAT 
GGCCACACAT GGTTTTAGTT TTGCTACAAC ATTGACTGGA TTGCATTTTG 
CAACCACAAC CTTGATGACA TTAGTAATGA AATGGTTGGG ACATATTCAG 
CCATCCTATT TACCATTGCC AGAACTCGTT AAATTCGTCT TTTTTGCAAA 
CTTATCAATT GTTGGGATGA ATGTTAGTTT GATGTGGAAC TCTGTTGGAT 
TCTATCAGAT TGCCAAGTTG TGTATTATTC CAGTCTTGTG CATTCTGGAA 
ATCCTGTTTG ACAAAGTCCG TTACTCAAGG AATACAAAAC TCAGTATAGT 
GCTTGTTTTA GTAGGAGTTG CTGTATGTAC TGTGACTGAT GTTAGTGTGA 
ATTCAAAAGG GCTGCTAGCA GCTGTAATTG CAGTTTGGAG CACAGCACTA 
CAGCAGCATT ACGTTCATCA CCTTCAAAAG AAGTACTCGC TTGGCTCATT 
CAACCTATTG GGTCATACTG CTCCAGCTCA GGCAGCATCC CTGTTAATAC 
TGGGGCCTTT TGTGGACTTC TGGCTGACCA ATAGAAGAGT TGATACTTTC 
AATTACACAA CAATAGTTAC GTTCTTCATT GTATTGTCGT GCACAATTGC 
TGTTGGGACC AATCTAAGCC AGTTCATATG CATTGGAAGA TTCACAGCTG 
TCTCATTTCA AGTTCTAGGC CATATGAAGA CGATTCTTGT ATTGACCTTG 
GGTTTTCTTT TCTTTGGAAA AGAGGGCCTT AATTTTCACG TAGTCCTTGG 
CATGATGCTT GCTGTGATTG GCATGATTTG GTACGGGAAT GCTTCGTCAA 
AACCGGGAGG CAAAGAGAGG CAGATTTACT CGGTGCCCAG CGAGAAAACT 
CAGAAGTCAT CACAATCAGA GCTTGACCAG AAGGTCTGAA ACAAAGTTGT 
TTCACTATTT TTACAGCTCC ATTGCTTAGC GAGCATTGAG AAGACCACGA 
TCTGATTTAT TCTTTTTTTT TCTGGTAAGT TTAAAGATGT TTCTGTACAA 
CTGAAATTCA TACCAGACAA ACAGAATATG GCAGGAACTA AGCGCGACGA 
TAATTTAATT TGTAATATTC CATTGAGTAA CTGCATATAT GATGGAAAGA 
TATTTTCAGC CG

Gene models with high sequence identity

AT4G09810.1 [+] show detail - Nucleotide-sugar transporter family protein
E-value: 4e-126; Score: 448.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Protein of unknown function DUF250	4e-31
HMMPanther	SOLUTE CARRIER FAMILY 35	1e-81
superfamily	Multidrug resistance efflux transporter EmrE	0.00051
superfamily	Multidrug resistance efflux transporter EmrE	0.0031

See the detailed result >

AT4G09810.1

Model type: Protein coding
Short Description: Nucleotide-sugar transporter family protein
Computational Description: Nucleotide-sugar transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT1G34020.1); Has 1601 Blast hits to 1598 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 311; Fungi - 204; Plants - 929; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).
Link: InterPro Scan - TAIR