K03011

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03011

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K03011

Determination of introduced cDNA(s)

  • J033089O08 - Rice Full-length cDNAs - Original: J033089O08

    full reading [+] show sequence

    Nucleotide sequence: J033089O08 - full reading 
    GACCAAAGCG AGTCCCTCCC CCTCCCGTCT CGAGCGCCGG TAAACTCCAC 
    GCCTCCAATC GGCCAATCGC CAATTCGCAA TCCATTCCCC CCGAAACCCT 
    AACCGGCGCC TCTCCTCCAC GCGCCGCGCC GCCTCCCGCT CCTCCCTCCC 
    AGCAGCGCCG CCGTCGTCGT CCCTCTCACC GGCGGGTGGC GGCGATGGCC 
    TCCTCGGCGT CGTCATCCAG GCACCAGGTC ACCATCACCC TCGGCCGCAG 
    CGGTCAGGTT GTCAAAAGGC GAGCTGTATC TGACATTGAT AATGATGATG 
    GTGTGCACTT AGGAAGAAAA CGATCTGTGA GGGACAGACT AGGAAATAAT 
    ATGGTTGGTT CTGAGTCGTA TGATGGCCAG CAGCGTAACA AAAGACGACA 
    GATAGAAACC AATGGTTTGC AGCATGGAGA TAATGATTGC CAGGTCGGTA 
    GGGATGATTT GAGATTGAAG CTTATGAAGA AAGGCTTGTC TAGCAATGGT 
    GGTGCAGAAC AGAATGGAGT GGATCTCCGT GAAAAGCTTT CCAGGAAACC 
    TAAGAATATA CGGAGGTATG ATGCAAGAGG ACATGTTCCA GAATCAAGGT 
    CTAGATATGA CGGAAGAGAT AAAATTCCAG AATTAAGGTC AAGATATGGC 
    ATGAGAGAGA GGCTCCCTGA GCCAAGGACA TCTGCTCTTC CTAGTCGAAT 
    TCCTTCTGCA AGAAGCATGG ATGATCTGTT GAAGTTGGAC TCTTCAAGAG 
    AAGCTTATTC CTCGTGGTCT GGTAATTTGA GGCACAGGTC CCCTGAAAAA 
    CTTAAAAGTG CTCGCAGAGA TATGTCTCCC TCAAGAACAT ATGATCATAT 
    TCGTTCCATG CCACCCATTA GATCTGCTGG TACCTCAAGG ACTTCAGGTC 
    TCATCACTAG AGACGCTCCT GATGCATTAA GAACTCAACC TTATGCTGGC 
    AAGTCTACCA TTTCTATTGA TACAACTCAG CCAGCAAATG GAGTTGCTTC 
    ATCTGCTACA GTGATGCCTA CAGCTCCTGT GATGCCAGAA GTACCGCTAA 
    CAGTTACTGG GTTGCTGAAT TCACTAGGAC TTGAGAAGTA TGTCTTCCTC 
    TTCCATGCTG AAGAGGTGGA TATGGCTGCA TTGAGTCAGA TGGGAGACAG 
    TGACCTGAAG GAAATAGGGG TACCAATGGG TCCTAGAAAG AAGATTCTCC 
    AGGCAGTGGC ACCTTATTCA AAACGGCGTA GATGAACAGC ATGCTCAGGA 
    ACTTGGGGCG TTCGTGGGCA ATGACAATTT ATTGGTGTAA GCTGCTTCAT 
    TGCAGATCTT GTATATCCCA ATGGTCTAGT GCTCTAGTCA ATCCGTTTCA 
    TTGCTGATAG ATCAACGCAT CGCTTTTCTT GGCATGCATA ATCTTATCTG 
    TCAGCTGATG ATCCCAATCC TGTTATTCAC GACCTGCCCC TTGTGTAGCA 
    GGATCTGAAA CATGGATATG TAGCTTTGCT ACACTAACCA GTCAGTTTTT 
    TCTTCCTCTT TGGGAATTGG GAACATCGAT GACCTGTAAT CGAAATCCCA 
    TGCTTTATGA CCTTGGGAGC GTTGGCAATT GAGTTTACTG GAACATACTA 
    GTGTTAAGAT TGTGTACAGA ATGCG

    Gene models with high sequence identity

    1. AT1G70180.2 [+] show detail - Sterile alpha motif (SAM) domain-containing protein
      E-value: 3e-19; Score: 94.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Sterile alpha motif 8.9e-06
    HMMPfam Sterile alpha motif, type 1 3.6e-12
    HMMPanther SUBFAMILY NOT NAMED 2.6e-08
    HMMPanther SCP160 2.6e-08
    superfamily Sterile alpha motif homology 1.8e-11

    See the detailed result >

    AT1G70180.2

    Model type
    Protein coding
    Short Description
    Sterile alpha motif (SAM) domain-containing protein
    Computational Description
    Sterile alpha motif (SAM) domain-containing protein; CONTAINS InterPro DOMAIN/s: Sterile alpha motif-type (InterPro:IPR013761), Sterile alpha motif (InterPro:IPR001660), Sterile alpha motif homology (InterPro:IPR010993), Sterile alpha motif, type 1 (InterPro:IPR021129); BEST Arabidopsis thaliana protein match is: Sterile alpha motif (SAM) domain-containing protein (TAIR:AT3G07170.1); Has 6486 Blast hits to 4294 proteins in 377 species: Archae - 0; Bacteria - 358; Metazoa - 2617; Fungi - 961; Plants - 670; Viruses - 147; Other Eukaryotes - 1733 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR