K03025

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03025

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K03025

Determination of introduced cDNA(s)

  • J013000P01 - Rice Full-length cDNAs - Original: J013000P01

    full reading [+] show sequence

    Nucleotide sequence: J013000P01 - full reading 
    TGGGGGGGCC GAAAAGCCTT TCAGAAGTCC AGCAAAAGCC GGCAAGGCGC 
    CGCCAACGCC GCCGCCATCA TCGCCGGAGA CGATGGAGAC CGCGGTGCCA 
    TGGAAAGTCC TCGAGTTCTA TAGCGGCATC GGCGGGATGA GGTACTCGCT 
    GGCGGCGTCG GGCGCGCGGG CCGAGGTGGT GGAGGCCTTC GACATCAACG 
    ACGTTGCCAA CGATGTCTAC GAGCTCAACT TCGGCCACCG CCCATACCAG 
    GGAAACATTC AAACACTCAC TGCTAGTGAC CTAGATAAGT ATAAGGCACA 
    AGCATGGCTT CTTTCTCCTC CATGCCAACC ATACACACGG CAAGGACTAC 
    AGAAGCATTC AGCTGATGCT CGAGCATTTT CATTCATAAA GATTCTTAAC 
    CTAATGAAAA ACATGTGCTT TCCTCCACAA ATGTTATTTG TGGAAAACGT 
    AGTCGGATTT GAGGTGTCTG ATACACATGA CCAGTTGATA GAGGTTCTTT 
    CAGATCTCAA TTTCAACACA CAAGAATTTA TCCTAAGCCC CTTGCAGTTT 
    GGTATCCCAT ATTCTAGACC TCGCTACTTT TGTCTGGCGA AACGAGAACC 
    TGTGAGTTTT CAAAATCCAT CAGACAACAG CAAGCTGCTC CGGACACCTA 
    CATTCCTAAC ATTGGTAAGG GCAGGTCACA ACAGATGTAA CCAGGATTCT 
    TCAGGTACAA TCTCTGACAT TAATGGGTCT GATGGATGCA CCCCAAGTGG 
    AATAATTTCT CAAGATTATG TAGTCCCGCT AAACTTGATT GAGCGGTGGG 
    GGAGTGCTAT GGGTATCTTT TTTTTTCTTA GTTTAAGACT CCTGAATCAA 
    TCATTTAATG ATAGATTATT ATGTTTTACT GATGCTTGGC TGTGGTGTCT 
    CCTCGACTGT TTGCAAGATA TTGTATGCCC TGAATCAAAA CGATGCTGTT 
    GTTTTACCAA AAGTTATTAT CGCTATGTCA AGGGGACAGG CTCCTTACTA 
    GCTACGTCCA ATAACCTCAA ACGAATTTCC AAAGAGGACC TTGAAATTTC 
    TTCACTGAAG GAGTTAGGCT TACGATTTTT CACCCCTCGT GAGGTTGCTA 
    ATCTGCATTC TTTTCCATCG AGTTTCCACT TTCCGAATCA CATAAGCCTT 
    AGGCAACAGT ATGCTATGCT GGGCAATAGC CTGAGTGTAG CAGTTGTGGG 
    GCCTTTGCTG CGTTATCTGT TTGCTGAGAC ATAGTGATGT TCAATCAGTT 
    GGCACATGAT GCTACACAGG ACAAACACAT TGACCTTCCT TTGCCCGTGT 
    TATCACCCTA AAGCCAGGTT GGTTCGTGGG TATGATTCGT GTACTCCCCG 
    AAGCTGATGG TTGTGGTTCA AACCTTGCAA CCCAATTGGA GTGAATTTCC 
    CACAGTGGTG CAACTTCAAC TTCATAGGGC TTGGGGACTT GTCGATTCAT 
    CGGTGGGAAG AAGACAGCGT GCATGATGGC CCGGCATGTA TCGGTGAAAC 
    TCTGACGCGA ATCTTACCTA GTAGAGTAGA GAAGCTTCCT CAGCATTTTC 
    CCTTTGCCCC AGGCATAAGT TTTAATAATA ATGTTGAATG TTTGAGGTGT 
    TACAGCATTT GACTCATGCG CATTGTGAAA CGAGGTTATT ATGGTTTAGA 
    ACTGAACTTC AACTTCATGA GCTCACCATT CGACTGTCTC AAATCAGTTT 
    GCTTTCTTGA TCTTTCTGCA AAGAGGCAAT ATTTTGACG

    Gene models with high sequence identity

    1. AT5G25480.1 [+] show detail - DNA methyltransferase-2
      E-value: 1e-118; Score: 424.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam DNA methylase, C-5 cytosine-specific 8.2e-34
    HMMPanther DNA (CYTOSINE-5)-METHYLTRANSFERASE 2 3.8e-154
    HMMPanther DNA methylase, C-5 cytosine-specific 3.8e-154
    superfamily S-adenosyl-L-methionine-dependent methyltrans 2.3e-65
    Gene3D no description 9.4e-42
    Gene3D no description 3.7e-37
    FPrintScan DNA methylase, C-5 cytosine-specific 6.2e-07
    FPrintScan DNA methylase, C-5 cytosine-specific 6.2e-07
    FPrintScan DNA methylase, C-5 cytosine-specific 6.2e-07

    See the detailed result >

    AT5G25480.1

    Model type
    Protein coding
    Short Description
    DNA methyltransferase-2
    Curator Summary
    Encodes a DNA methyltransferase homolog. Human Dnmt2 methylates tRNA-Asp and can methylate Arabidopsis tRNA-Asp in vitro.
    Computational Description
    DNA methyltransferase-2 (DNMT2); FUNCTIONS IN: DNA binding; INVOLVED IN: DNA methylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA methylase, C-5 cytosine-specific (InterPro:IPR001525); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR