K03035

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03035

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K03035

Determination of introduced cDNA(s)

  • J033073C08 - Rice Full-length cDNAs - Original: J033073C08

    full reading [+] show sequence

    Nucleotide sequence: J033073C08 - full reading
    GGCGTTTCTT TCCCCCTCCA CAAGTAGCTC TCTCCCCGCC GGTCTCCGGG 
    TAGCCGCCTC CGAACCCAGC CGAGAGCTCG AAGCCTTTCC TTACTCTCTT
    GCCATGTACC GCGCGGCGGC CAGCCTCGCC TCCAAGGCCC GTCAAGCCGG
    GAGCAGCGCT CGTCAGATTG GGAGTAGGCT CGCCTTGCAT AGAAACTATG
    CTGCCAAGGA CATCAAGTTT GGTGTCGAGG CCCGGGCCTT GATGTTGAGG
    GGTGTTGAGG AGTTGGCTGA TGCGGTCAAA GTGACAATGG GTCCTAAGGG
    ACGCACTGTT GTTATTGAGC AAAGCTTTGG TGCTCCTAAA GTTACAAAGG
    ATGGAGTTAC TGTTGCCAAG AGCATTGAAT TCAGTAACAG GGTTAAGAAT
    GTTGGTGCAA GCCTTGTGAA GCAGGTTGCT AATGCGACTA ACGACACTGC
    TGGGGATGGG ACAACATGTG CTACTGTTCT TACAAAAGCT ATATTCGCTG
    AGGGATGCAA GTCTGTAGCA GCTGGAATGA ATGCGATGGA TTTGAGACGT
    GGTATCTCGA TGGCTGTTGA TGAAGTAGTG ACAAATTTAA AAGGCATGGC
    CAGAATGATT AGCACATCAG AGGAAATAGC ACAGGTTGGT ACTATATCAG
    CTAATGGGGA AAGGGAAATT GGTGAGCTCA TTGCAAAAGC TATGGAGAAG
    GTTGGCAAAG AGGGAGTCAT CACTATTACG GATGGTAACA CCCTCTACAA
    TGAGCTTGAA GTTGTAGAAG GCATGAAACT TGACAGAGGT TATATCTCTC
    CTTACTTCAT TACCAACCAA AAGAACCAGA AATGTGAACT AGACGATCCA
    CTGATCTTGA TACATGACAA GAAAGTGTCC AACCTTCATG CTGTGGTGAA
    AGTGTTGGAG TTAGCTCTGA AGAAGCAAAG GCCTCTGCTT ATTGTTGCAG
    AGGATGTAGA AAGTGAAGCA TTGGGTACTC TGATTATTAA CAAGCTTCGT
    GCAGGCATTA AGGTTTGTGC AGTCAAAGCT CCTGGGTTTG GGGAGAGCAG
    GAAAGCCAAC TTACAGGACC TCGCTATCCT TACTGGGGGA GAAGTCATAA
    CTGAAGAACT TGGAATGAAC CTTGAGAATT TTGAGCCTCA GATGCTGGGG
    ACTTGCAAGA AGGTTACAGT ATCTAAGGAT GACACAGTCA TCCTTGATGG
    AGCTGGAGAT AAGAAGGCCA TTGAAGAGAG AGCTGAGCAG CTGAGATCTG
    CAATTGAGCT AAGCACTTCT GACTATGATA AAGAGAAGCT TCAGGAGCGG
    TTAGCAAAGC TTTCTGGTGG TGTTGCTGTT CTAAAGATTG GTGGAGCTAG
    TGAAGCGGAG GTTGGTGAGA AGAAGGATAG AGTGACTGAT GCACTAAATG
    CTACCAAAGC TGCTGTAGAG GAGGGTATTG TACCAGGTGG TGGAGTTGCC
    CTTCTGTATG CATCAAAAGA CCTGGATAAA TTGCAGACTG CGAACTTTGA
    CCAAAAGATT GGTGTCCAGA TCATTCAAAA TGCTTTGAAG ACCCCAGTGC
    ACACAATTGC TTCGAATGCG GGTGTAGAAG GATCTGTCAT TATTGGCAAG
    CTTTTGGAAC AGGATAATAC TGATCTAGGT TATGATGCTG CTAAAGGTGA
    ATACGTTGAC ATGGTGAAGT CTGGTATCAT TGACCCACTA AAAGTTATCA
    GAACAGCTCT GGTGGATGCT GCAAGTGTGT CCTCTCTAAT GACTACCACA
    GAATCTATTA TTGTTGAGAT CCCCAAGGAA GAGGAGGCAG CAGCCGCAGC
    ACCCGCAATG GGTGGCATGG GCGGGATGGG TTTCTAGCTT ACTCTCCGGC
    TCATGCAAAG TTATTGTGTG ATAAATTTAT TCACTAGATT AGATTATTTT
    TGCGGTGCGG ACATCTTTAA CTGATGAGGT GGCTGTCAGA TTTTGATTCT
    GCTGCAAGAG GATTGTAACT TGAAGTAGTA GAATTGAACT TTGGAATTTG
    GGATGCATAA AATCCTTCTA TATAGGTGGT GCAAGTTGGA TTTTGTGATT
    TGCTCTGGGT TTGCCTATTT TCGCTTTTGC TCGAGCAATC CAAGAACAGT
    ACTACTTCGA TAAATGTGCG AGTTCCCTGT GACTGGTCCG TTTAGAATTA
    GTTTAATCTT AACTTTCAGC CACTTCTAAC TCAAAGCAAA GAATGAAGCT
    ACTGTGGCAA TTTTTCCGGA TTT

    Gene models with high sequence identity

    1. AT3G23990.1 [+] show detail - heat shock protein 60
      E-value: 0; Score: 925.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Chaperonin Cpn60/TCP-1 5.4e-117
    HMMPanther CHAPERONIN-60KDA, CH60 0
    HMMPanther Chaperonin Cpn60/TCP-1 0
    PatternScan Chaperonin Cpn60, conserved site 0
    FPrintScan Chaperonin Cpn60 3.2e-71
    FPrintScan Chaperonin Cpn60 3.2e-71
    FPrintScan Chaperonin Cpn60 3.2e-71
    FPrintScan Chaperonin Cpn60 3.2e-71
    FPrintScan Chaperonin Cpn60 3.2e-71
    superfamily Chaperonin Cpn60/TCP-1 2e-73
    superfamily GroEL apical domain-like 6.3e-62
    superfamily GroEL-intermediate domain like 2.5e-19
    Gene3D no description 3.1e-83
    Gene3D no description 2e-32
    HMMTigr Chaperonin Cpn60 0
    Coil coiled-coil 0
    HAMAP Chaperonin Cpn60 37.575

    See the detailed result >

    AT3G23990.1

    Model type
    Protein coding
    Short Description
    heat shock protein 60
    Curator Summary
    mitochondrial chaperonin HSP. assist in rapid assembly of the oligomeric protein structures in the mitochondria.
    Computational Description
    heat shock protein 60 (HSP60); FUNCTIONS IN: copper ion binding, ATP binding; INVOLVED IN: response to cadmium ion, response to cyclopentenone, chaperone-mediated protein complex assembly, response to heat, mitochondrion organization; LOCATED IN: cytosol, cytosolic ribosome, mitochondrion, plasma membrane, mitochondrial matrix; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: heat shock protein 60-2 (TAIR:AT2G33210.1); Has 33706 Blast hits to 33652 proteins in 8680 species: Archae - 676; Bacteria - 21745; Metazoa - 1618; Fungi - 1515; Plants - 790; Viruses - 2; Other Eukaryotes - 7360 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR