K03043

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03043

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K03043

Determination of introduced cDNA(s)

  • J033078N24 - Rice Full-length cDNAs - Original: J033078N24

    full reading [+] show sequence

    Nucleotide sequence: J033078N24 - full reading 
    GATCTATCCC CCCTCTACTC GCGGCTGCGG CGGCAAGGCG GCGAGACGTG 
    GGAGAGGGAT TTACAGGTAG AGGGAGAGGG TGGAGGAGGA GAGGCTGAGG 
    CTAGGAAGCG GTTTCGCCAT GGCGAGCGTC GACCCGTCCC GGAGCTTCGT 
    GAGGGACGTG AAGCGCGTCA TCATCAAGGT GGGCACTGCA GTTGTCTCCA 
    GACAAGATGG AAGATTGGCT TTGGGCAGGG TTGGAGCTCT GTGCGAGCAG 
    GTTAAGGAAC TGAACTCTTT AGGATACGAA GTGATTTTGG TCACCTCAGG 
    TGCTGTTGGA GTGGGGCGAC AGCGACTTAG GTACCGGAAG CTTGTCAATA 
    GCAGCTTTGC TGATCTGCAA AAGCCACAGA TGGAGTTAGA TGGAAAGGCT 
    TGTGCCGCTG TTGGTCAGAG TGGACTGATG GCTCTTTACG ATATGTTGTT 
    TAACCAACTG GATGTCTCGT CATCTCAACT TCTTGTCACC GACAGTGATT 
    TTGAGAACCC AAAGTTCCGG GAGCAACTCA CTGAAACTGT TGAGTCATTA 
    TTAGATCTTA AAGTTATACC AATATTTAAT GAAAATGATG CCATCAGCAC 
    TAGAAAGGCT CCATATGAGG ATTCATCTGG TATATTCTGG GATAATGACA 
    GTTTAGCAGG ACTGTTGGCA CTGGAACTGA AAGCTGATCT CCTTATTCTG 
    CTCAGTGATG TGGATGGGTT GTATAGTGGT CCACCAAGTG AACCATCATC 
    AAAAATCATA CACACTTATA TTAAAGAAAA GCATCAGCAA GAAATCACTT 
    TTGGAGACAA ATCTCGTGTA GGTAGAGGAG GCATGACAGC AAAAGTGAAG 
    GCTGCTGTCT TGGCTTCAAA TAGCGGCACA CCTGTGGTTA TTACAAGTGG 
    GTTTGAAAAT CGGAGCATTC TTAAAGTTCT TCATGGGGAA AAAATTGGTA 
    CTCTCTTTCA CAAGAATGCG AATTTGTGGG AATCATCTAA GGATGTTAGT 
    ACTCGTGAGA TGGCTGTTGC CGCAAGAGAT TGTTCAAGGC ATCTACAGAA 
    TTTGTCATCA GAGGAACGAA AAAAGATATT GCTAGATGTT GCAGATGCTT 
    TGGAGGCAAA TGAGGATTTA ATAAGGTCTG AGAATGAAGC TGATGTAGCT 
    GCGGCCCAAG TTGCTGGATA TGAGAAGCCT TTGGTTGCTA GATTGACTAT 
    AAAACCAGGA AAGATAGCAA GCCTTGCAAA ATCTATTCGT ACCCTTGCAA 
    ATATGGAAGA CCCTATAAAC CAGATACTTA AAAAGACAGA GGTTGCTGAT 
    GATTTAGTTC TTGAGAAAAC ATCTTGCCCA TTAGGTGTTC TCTTAATTGT 
    TTTTGAGTCC CGACCTGATG CCTTGGTTCA GATTGCATCT TTGGCAATTC 
    GAAGTGGTAA TGGTCTTCTC CTAAAAGGTG GAAAAGAAGC TATCAGATCA 
    AACACGATAT TGCATAAGGT TATAACTGAT GCTATTCCTC GTAATGTTGG 
    TGAAAAACTT ATTGGCCTTG TTACAACTAG AGATGAGATC GCAGATTTGC 
    TAAAGCTTGA TGATGTCATT GATCTTGTCA TTCCAAGAGG AAGTAATAAG 
    CTTGTCTCTC AAATCAAGGC GTCAACTAAG ATTCCTGTTC TTGGGCATGC 
    TGATGGTATA TGCCACGTAT ATATTGACAA ATCAGCTGAC ATGGATATGG 
    CAAAACATAT TGTAATGGAT GCAAAAATTG ATTACCCAGC AGCCTGCAAT 
    GCAATGGAGA CCTTACTAGT TCATAAGGAT CTTATGAAGA GTCCAGGCCT 
    TGACGACATA TTAGTAGCAC T

    Gene models with high sequence identity

    1. AT2G39800.4 [+] show detail - delta1-pyrroline-5-carboxylate synthase 1
      E-value: 0; Score: 774.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Glutamate 5-kinase 1e-58
    FPrintScan Glutamate 5-kinase 1e-58
    FPrintScan Glutamate 5-kinase 1e-58
    FPrintScan Glutamate 5-kinase 1e-58
    FPrintScan Glutamate 5-kinase 1e-58
    HMMPfam Aspartate/glutamate/uridylate kinase 2.6e-34
    HMMPfam Aldehyde dehydrogenase 1e-07
    Gene3D Aspartate/glutamate/uridylate kinase 4.7e-21
    Gene3D Aldehyde dehydrogenase, N-terminal 6.1e-56
    Gene3D Aldehyde dehydrogenase, C-terminal 2.6e-16
    superfamily Aldehyde/histidinol dehydrogenase 2.4e-62
    superfamily Aspartate/glutamate/uridylate kinase 8.4e-55
    PatternScan Glutamate 5-kinase, conserved site 0
    HMMPanther DELTA 1-PYRROLINE-5-CARBOXYLATE SYNTHETASE 0
    HMMPanther GLUTAMATE SEMIALDEHYDE DEHYDROGENASE 0
    HMMTigr Delta l-pyrroline-5-carboxylate synthetase 0
    HMMTigr Glutamate 5-kinase, ProB-related 2.8e-24

    See the detailed result >

    AT2G39800.4

    Model type
    Protein coding
    Short Description
    delta1-pyrroline-5-carboxylate synthase 1
    Computational Description
    delta1-pyrroline-5-carboxylate synthase 1 (P5CS1); CONTAINS InterPro DOMAIN/s: Glutamate 5-kinase (InterPro:IPR001057), Glutamate 5-kinase, conserved site (InterPro:IPR019797), Aspartate/glutamate/uridylate kinase (InterPro:IPR001048), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Gamma-glutamyl phosphate reductase GPR, conserved site (InterPro:IPR020593), Aldehyde dehydrogenase, C-terminal (InterPro:IPR016163), Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Delta l-pyrroline-5-carboxylate synthetase (InterPro:IPR005766), Gamma-glutamyl phosphate reductase GPR (InterPro:IPR000965), Aldehyde dehydrogenase (InterPro:IPR015590), Glutamate 5-kinase, ProB-related (InterPro:IPR005715); BEST Arabidopsis thaliana protein match is: delta 1-pyrroline-5-carboxylate synthase 2 (TAIR:AT3G55610.1).
    Link
    InterPro Scan - TAIR