K03109

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03109

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K03109

Determination of introduced cDNA(s)

  • J023064K13 - Rice Full-length cDNAs - Original: J023064K13

    full reading [+] show sequence

    Nucleotide sequence: J023064K13 - full reading 
    GTTTTCCAGT TTCCCTTCCT TCCTTCCTCC GCGTCGCTTC CCTTCCTTCG 
    CGCGGCGCTG CTCCGGTAGG GTTTTAGCCG GCGATCTCTC CCCTCTCGCG 
    CGCTCGGCGA CTGAGAATGG TCGAGGTGGA GGAAGTCAGC AACAAGATGC 
    AGGTGCAGAT GCGCCTCCAC CCCGCCGCGG CGGCGGAGGA GGAGGACGCC 
    GACCTCCCGC TCCCCGCCCT CTTCGACAAG GCGTCCCACC TCCACTCCCT 
    CGCCTCCAGC TCCTCCCTCG ACCAGGAAGG GATCCGCAAG GGGGTCGACC 
    TGCTGCGGCG GTGCGACGAG ATGGTCAGTA AGGTCGGCCT CTTCTCCTCC 
    AACGAGACCA AGGATGACAT CTCCACCGCC AACCTCAAAT ACCTACTCGT 
    ACCGTACTAC CTTGGGGAAA TGACTGAAAG GGTAGCGCAG GAAGATCGGA 
    TCCCAGTCCT TAAGGCGTCG CAGGATCATT TGAAGGAATT CATTTCTATC 
    TGTGAAGCAC TGGAGCTTAT ATCAGAGGAT GAGCTTGAAA TATCTAGGCA 
    GAAGCAACCT GATACCATGG CAAATCGAAG AGCACAGAAG GTTGCACGGT 
    TCAAGCGCCA AAAGGCTGCA GAAACAAAGC TCCTAGAAAT CAAGGAGAGG 
    AAAGAAAGGC GTAGGCGGTC ATTGAGAGCA GCTGCTTTAT CAGCTCCTAT 
    TGAAGCTGGG GAGGAAGATG CCTTTGAGGA TGATGGAGAG GAAGAAAGAG 
    AGGCATGGTT AGCTACTATC TCATTGGCTC TATGCAAGGC TTTTGACCTT 
    CTTGACATGT TAAAGAAGGA AGAAGAAATG CTTCCGGCAG TAAAAGAAAG 
    GAAAGCGAAG GATGGTAATG CATTTGCTCG TGAAATGCTT GATGAACGTA 
    CAAAAAGGGC TGAAGCATGG CACCATAATG CTGCCAACCG TGCACCATAC 
    TCCAAACCAG CTGATCCAAT CACTTGTGCA ACATTTGCTC AAGATGTCAT 
    TGAAGGTAGA GCAAGTGTTT CACAAGCACA TGAGCACAAA CACCAGCCGC 
    TGATATTTGG CCCTGCAAGT CTTGTTGGTG GAGGACTAAC CAGTGAAAGA 
    GAGAGAATGG CAGCACAAGT TTTTCAGCCA AGTTATAGGT TGCCAACGAT 
    GAGCATAGAA GAAGCTGGCT TACGTGAGAT GAAAATGATG GAGAAATGGC 
    AAGAAAGAAC TGCCAAGATG ATTCAAGAAT CAAACTCCGC ATGGCACAAG 
    GATGGCAGTC GGTCAGCCCA AGAGGACGAG GACGCCGAAG AGGAGAAAGC 
    GAGAGGATGG GATGACTGGA AGGACGATAA CCCTCGTGGT GCAGGCAACA 
    AGAAGCTCAC TCCCTGTGGC TAAATTATAT GCTATGGCAA TTCTATTGAA 
    CTTACATCTG AAACTGAAGC TCGTGTAAAA ATATGTGGTT TTTACTAACT 
    TTCCTTACTG CGGCATTTGT TGATTGCTGA GTAATAATGT GTTCCATATG 
    TATATTATAA TTGTGCATGG TTTCCTTCTG CCAATATATG GGCAACCAAG 
    TAATGCCAGA AAAGCTGATT TGAGAAGC

    Gene models with high sequence identity

    1. AT5G53000.1 [+] show detail - 2A phosphatase associated protein of 46 kD
      E-value: 7e-102; Score: 368.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam TAP42-like protein 5.6e-100
    HMMPanther PP2A REGULATORY SUBUNIT 9.8e-27
    HMMPanther TAP42-like protein 9.8e-27
    HMMPanther PP2A REGULATORY SUBUNIT 1.6e-218
    HMMPanther TAP42-like protein 1.6e-218
    HMMPanther PP2A REGULATORY SUBUNIT 1.3e-13
    HMMPanther TAP42-like protein 1.3e-13

    See the detailed result >

    AT5G53000.1

    Model type
    Protein coding
    Short Description
    2A phosphatase associated protein of 46 kD
    Curator Summary
    PP2A-associated protein with a possible function in the chilling response
    Computational Description
    2A phosphatase associated protein of 46 kD (TAP46); CONTAINS InterPro DOMAIN/s: TAP42-like protein (InterPro:IPR007304); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR