K03143

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	increased size (PATO:0000586) (Rosette leaf::Shape::large) abnormal (PATO:0000460) (Rosette leaf::Others)
	stem (PO:0009047)	increased thickness (PATO:0000591) (Stem::Shape::thick) present in greater numbers in organism (PATO:0000470) (Stem::Number::many) present in fewer numbers in organism (PATO:0001997) (Stem::Number::few)
T2
	rosette leaf (PO:0000014)	increased width (PATO:0000600) (Rosette leaf::Shape::wide)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K03143

Determination of introduced cDNA(s)

J023150J15 - Rice Full-length cDNAs - Original: J023150J15

full reading [+] show sequence

TTCCCCACCA CGCACGCACC GCACAGACGC AAGCTCACCT CAGCTCAGCT 
CACAATTCGG CTGTATCCAA GATCGCCATG GGCTTCCCGG TGGGCTACTC 
GGAGCTGCTC CTCCCGAGGC TGCTGCTCCA GGTGCTCCTC CTCCTCGGCC 
ACCTCCATCG CTTTCTCCTC TGGGCCTTCC ACGCAGTCGG CCTCGGCGAC 
CTCATCGACA ACCCGCCCGG CCTGGCGGCC ACGGAGCAGG ACCTGATGCT 
GCAGGGGCGC GGCGGCGGGA TGGCGGAGGG TTGGGCGTCG TCGTCGGCGC 
TCCAGCACCG CCGGCCCGAG TTCAGGGCGA TTCCGCCGAT GGCCATCGAG 
GAGGCCCTCC CCGTGGTGCG GTTCGACGAG CTGGTGGCGT CCGCCCCGGC 
GGCGGTGTGC GGTGGCGGCG ACTGCGCGGT CTGCCTCAGC GGCATCTGCG 
GGCGCGACGA GGTGCGGCGG CTGTCCAACT GCCGCCACGT TTTCCACCGC 
GGCTGCCTCG ACCGCTGGAT GGCCCACGAG CAGCGCACCT GCCCGCTCTG 
CCGCGCGCCG CTCATCCCCG ACGAGCTCTT GCCCGCCGCC TCCGGCCTGC 
CTGACCCCTC CGACTACGAC CTCTCGTACT ACCCATCCCC GCTGCCGCTG 
GCGCCCACCC CGACGCTGCT GCGACCACAC GAGCTGCTGC TCAACGGCTT 
GGGCGGTTTC CAGTGAGCCC GCCAATCCAC CGCCCCGGTC AATTTCGTTG 
CAACCGGCAT GACAGAGCTG CCTCAACTAC GGCACACGGG CACATAGGCG 
TCCTGATTTG TACATAGGCG CCAAGGAGAA CTCCCCCCAA AAAAACACAA 
GTAGGAATAG TTTGCTGCTA TATAGGTCGA TTCCACCTTC CAAGCCTGCG 
AAGTTGTGAA TCCTTTTTTT TTTGCAGATT ACTAGTAGTA TATTAAATTT 
GTTGAAGCAG AGCAGTGCCA CAGTTTGGTG CTTGCTAATT TGGCAAGCCG 
TTTAATCCAA TCTCCCCACG CTATTCAAAT CTT

Gene models with high sequence identity

AT3G61460.1 [+] show detail - brassinosteroid-responsive RING-H2
E-value: 6e-24; Score: 108.00

InterPro Scan Digest

Program	Description	E-value
superfamily	RING/U-box	0.000000000000009
HMMPfam	Zinc finger, C3HC4 RING-type	0.00000059
ProfileScan	Zinc finger, RING-type	12.238
Gene3D	no description	0.000000000097
HMMSmart	Zinc finger, RING-type	0.000011
HMMPanther	gb def: Hypothetical protein At2g28920	0.000000000057
HMMPanther	RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW D	0.000000000057

See the detailed result >

AT3G61460.1

Model type: Protein coding
Short Description: brassinosteroid-responsive RING-H2
Curator Summary: Encodes a novel ring finger protein and forms an N-terminal hydrophobic domain and a C-terminal RING-H2 signature. Expression is down regulated by brassinolide.
Computational Description: brassinosteroid-responsive RING-H2 (BRH1); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to brassinosteroid stimulus, response to chitin; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G63840.1); Has 6755 Blast hits to 6739 proteins in 268 species: Archae - 0; Bacteria - 0; Metazoa - 1714; Fungi - 535; Plants - 3593; Viruses - 29; Other Eukaryotes - 884 (source: NCBI BLink).
Link: InterPro Scan - TAIR